| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3320268 | 328 (1.360) | 16 (0.070) | 5/146 | 17.7 | 4.3% | intergenic (‑349/+81) | tldD/yhdP | predicted peptidase/conserved membrane protein, predicted transporter |
| ? | REL606 | = 4603900 | 398 (1.700) | intergenic (+406/+14) | yjjV/yjjW | predicted DNase/predicted pyruvate formate lyase activating enzyme | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGC‑GTGAACGCCCTATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3320192‑3320268‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgGCCTACGGTTCGGCACAGACTTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATTGTGCGCCAACTGC < REL606/4603900‑4603826 TCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGGTGCGGG‑GGGAACGCCCCATCC > 2:466725/1‑76TCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGGTGCGGC‑GGGGACGCCCCATCC > 2:3298286/1‑76TCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGGTGGGGC‑GTGGAAGCCCCATCC > 1:5700664/1‑76TCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGG‑GGAAAAGCCCTATCC > 1:993051/1‑76TCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGC‑GTGAACGCCCTATCC < 1:5923085/76‑1TCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGC‑GTGAACGCCCTATCC < 1:7396378/76‑1 cgGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGATGGGGG‑GGGAAAGCCCTATCCc > 2:7246239/3‑75 cgGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGC‑GTGAACGCCCTATCCG < 2:1841635/74‑1 CCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGC‑GTGAACGCCCTATCCG < 2:1978319/76‑1 CCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGC‑GTGAACGCCCTATCCG < 2:998957/76‑1 CCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGC‑GTGAACGCCCTATCCG < 2:3007611/76‑1 CCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGC‑GTGAACGCCCTATCCG < 2:1676341/76‑1 CGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGCTGCGGG‑GTAAACGGCCTATCCGc > 1:3611806/1‑75 GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGGTGCGGG‑GGGGACGCCCCATCCcac > 2:2227870/1‑73 TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGGTGCGGCGGGGAACGCCCTTTCCccc > 2:6179402/1‑73 TTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGTAGCGGC‑GTGAACTCCCTTTCCGGCCT > 2:1688184/1‑76 TTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGATGCGGC‑GTGAAAGCCCTCTCCGCCCT > 1:2408402/1‑76 TTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGGTGCGGG‑GGGAACGCCCTATCCCGCCc > 1:906776/1‑75 TGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGGTGCGGC‑GTGAAAGGCCTATCCGCCCTc > 2:5982232/1‑75 GTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGGTGCGGC‑GGAAACGCCCTATCCGGCCTcc > 2:870598/1‑74 GTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGATGCGGG‑GGGAACGCCCTATCCCGCCccc > 1:852338/1‑73 GTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGAAGGGGG‑GGGAACGCCCTCTCCGCCCTAC > 2:4568324/1‑76 TAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGGTGCGGG‑GGGAAAGCCCTCACCGGCCCACG > 1:2535225/1‑76 TAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGGTGCGGC‑GTAAACGCCCTATCCGCCCTACG > 1:6066214/1‑76 TAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGGGGC‑GGGGACGCCCCATCCGCCCTACG > 1:6408503/1‑76 TAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGC‑GCGAAAGCCCTATCCGGCCTACG > 2:4545402/1‑76 GGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGAAGCGGA‑GAGAACCGCCTCTCCGGCCTACGGg > 1:3776241/1‑75 GGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGGTGCGGC‑GTAAAAGCCCTATCCGGCCTACGGT > 2:3189106/1‑76 GGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGC‑GGGAAACCCCCATCCGCCCCACGGT > 1:3052689/1‑76 CCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGG‑GGAAACGCCCTATCCGGCCCACCGTTt > 1:6795657/1‑75 CCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCCGATGCGGC‑GGGGAAGCCCTCTCCGCCCTACGGTTt > 1:3116149/1‑75 CTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGC‑GTGAACGCCCTATCC < 2:607414/63‑1 gCGGCCTACGGTTCGGCACAGACTTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATTGTGCGCCAACT < 2:6644840/75‑1 CGGCCTACGGTTCGGCACAGACTTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATTGTGCGCCAACTG < 2:5734794/76‑1 CGGCCTACGGTTCGGCACAGACTTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATTGTGCGCCAACTG < 2:59169/76‑1 CGGCCTACGGTTCGGCACAGACTTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATTGTGCGCCAACTG < 1:4537672/76‑1 CGGCCTACGGTTCGGCACAGACTTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATTGTGCGCCAACTG < 1:7762695/76‑1 CGGCCTACGGTTCGGCACAGACTTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATTGTGCGCCAACTG > 2:4586325/1‑76 CGGCCTACGGTTCGGCACAGACTTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATTGTGCGCCAACT > 1:2623513/1‑75 GGCCTACGGTTCGGCACAGACTTGTAGGCTTGATACGACGCGTCACACGGCGGATCAGGCATTGTGCGCTAACTGC > 2:7535695/1‑76 GGCCTACGGTTCGGCACAGACTTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATTGTGCGCCAACTGC > 2:5855830/1‑76 GGCCTACGGTTCGGCACAGACTTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATTGTGCGCCAACTGC > 2:5917663/1‑76 GGCCTACGGTTCGGCACAGACTTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATTGTGCGCCAACTGC < 2:644354/76‑1 GGCCTACGGTTCGGCACAGACTTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATTGTGCGCCAACTGC > 1:1301118/1‑76 TCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGC‑GTGAACGCCCTATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3320192‑3320268‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgGCCTACGGTTCGGCACAGACTTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATTGTGCGCCAACTGC < REL606/4603900‑4603826 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |