| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3627801 = | 259 (1.080) | 4 (0.020) | 4/136 | 17.8 | 1.7% | coding (96/1680 nt) | yhjU | predicted inner membrane protein |
| ? | REL606 | = 3741644 | NA (NA) | noncoding (322/768 nt) | IS1 | repeat region | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 261 total aligned reads displayed.
TACTGCCATGCCTTCTTCCCTCTGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCCGCGTTTCTGCTGATGCCC > REL606/3627726‑3627876 | tACTGCCATGCCTTCTTCCCTCTGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTc < 1:6300229/76‑1 (MQ=255)tACTGCCATGCCTTCTTCCCTCTGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTc > 2:5152137/1‑76 (MQ=255) gCCATGCCTTCTTCCCTCTGGCAATACTGGCGCGGCCTTTCCGGCTGGGAATTTCATTTTTCGGGTTAGGTTCgcc > 1:2167084/1‑74 (MQ=255) gCCATGCCTTCTTCCCTCTGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAAATTCCATTTTCTGGTTAAGTTAGGcc > 2:6777035/1‑76 (MQ=255) cATGCCTTCTTCCCTCTGGCAATACTGGCGCGGCCTTTCCGGCT‑GGGAATTCTATTTTTTGGTTTAATTTGGGCtg > 1:2535654/1‑76 (MQ=255) cATGCCTTCTTCCCTCTGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTTAGTTCGGCCtt > 1:5355372/1‑75 (MQ=255) tGCCTTCTTCCCTCTGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCtgtt < 1:4878992/76‑1 (MQ=255) gCCTTCTTCCCTCTGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCtgttt > 2:625066/1‑75 (MQ=255) ccTTCTTCCCTCTGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCtgttgt < 1:6157335/76‑1 (MQ=255) cttcttCCCTCTGGCAATACTGGCGCGGCCTTTCCGGCT‑GGGACTTCTATTTTCTGGTTTAGTTCGGCCTGTtgtg > 2:2320745/1‑76 (MQ=255) tcttcCCTCTGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTggg > 2:4266913/1‑76 (MQ=255) cttcCCTCTGGCAATACTGGCGCGGCCTTTCCGGCT‑GGGACTTCTATTTTTTTGTTTAATTCGGCCTGTTTTgggg > 1:6236605/1‑75 (MQ=255) cttcCCTCTGGCAATACTGGCGCGACCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGc < 2:2760654/76‑1 (MQ=255) ttcCCTCTGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCg > 2:1450585/1‑76 (MQ=255) tcCCTCTGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTgggggg > 1:880419/1‑76 (MQ=255) tcCCTCTGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCgg > 1:1586391/1‑76 (MQ=255) tcCCTCTGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGGTCGGCCTTTTgggggggg > 2:388313/1‑76 (MQ=255) tcCCTCTGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAAAGTTTATTTTCTGGGTAAGTTCGGCCTGTTGTGGGCgg > 2:1203057/1‑76 (MQ=255) cccTCTGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCggg > 2:7313275/1‑76 (MQ=255) ctctGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGat < 2:7546310/76‑1 (MQ=255) ctctGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGat > 1:7911532/1‑76 (MQ=255) ctctGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGat < 1:5568300/76‑1 (MQ=255) ctctGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGat < 2:2913800/76‑1 (MQ=255) ctctGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGat < 2:2573099/76‑1 (MQ=255) tctGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGgta > 2:3687842/1‑76 (MQ=255) tctGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGata < 2:4598716/76‑1 (MQ=255) tctGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGata < 2:5230292/76‑1 (MQ=255) ctGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGatat < 1:4742741/76‑1 (MQ=255) ggCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGGTATCt > 1:914707/1‑76 (MQ=255) ggCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGCTATCt > 2:6087708/1‑76 (MQ=255) cAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTa > 2:852446/1‑76 (MQ=255) aaTACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTaa < 1:552218/76‑1 (MQ=255) aaTACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTaa < 1:4399482/76‑1 (MQ=255) aaTACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTaa < 2:7603206/76‑1 (MQ=255) tACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTTTGGGCGGGATATCTTAACt > 2:4983254/1‑76 (MQ=255) tACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGGTATCTTaaat > 2:6069542/1‑74 (MQ=255) tACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACt < 2:2302649/76‑1 (MQ=255) tACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACt < 2:477106/76‑1 (MQ=255) aCTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTTTTGTTAAGTTCGGCCTGTTTTGGGGGGGGTATTTTAACtt > 1:7107562/1‑76 (MQ=255) aCTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACtt < 2:3036338/76‑1 (MQ=255) tGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTcc > 1:5827920/1‑76 (MQ=255) tGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTcc > 1:774175/1‑76 (MQ=255) ggCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCa < 1:422206/76‑1 (MQ=255) gcgcGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCAt < 2:2038599/76‑1 (MQ=255) gcgcGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCAt < 1:1001464/76‑1 (MQ=255) gcgcGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCAt < 1:3478398/76‑1 (MQ=255) gcgcGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCAt < 1:2487234/76‑1 (MQ=255) gcgcGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCAt < 1:3247609/76‑1 (MQ=255) gcgGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGGTATCTTAACTTCCATcc > 1:5220909/1‑76 (MQ=255) gcgGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATcc < 1:3953342/76‑1 (MQ=255) gCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGct > 2:3673249/1‑76 (MQ=255) ccTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGctc < 1:7648406/76‑1 (MQ=255) cTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGctcc < 2:5988312/76‑1 (MQ=255) tCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCa < 1:6420659/76‑1 (MQ=255) ccGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCaa < 2:7872125/76‑1 (MQ=255) cGGCT‑GGAACTTCTTTTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTTCATCCGCTCCCCaca > 2:2084463/1‑74 (MQ=255) cGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAAt > 2:3183484/1‑76 (MQ=255) ggCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAAtt > 2:3294030/1‑76 (MQ=255) gCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGAGATCTTAACTTCCATCCGCCCCTCAAttt > 2:3626176/1‑76 (MQ=255) cT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTg > 2:1696635/1‑76 (MQ=255) t‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCCATTTgg > 2:596483/1‑76 (MQ=255) t‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTgg > 2:4019882/1‑76 (MQ=255) t‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTgg < 2:4168603/76‑1 (MQ=255) t‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTgg > 2:5469825/1‑76 (MQ=255) t‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTgg < 2:7247132/76‑1 (MQ=255) ggAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGgt < 2:1920596/76‑1 (MQ=255) ggAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGgt > 1:5911122/1‑76 (MQ=255) aCTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGtt > 2:1823563/1‑76 (MQ=255) cttcttTTTTCATGTTAATTTCGGCATGTTGTAGGCGTTTTATCTTATCTTCCATCCGCTCCTCAATTTGgtgtat < 2:6434116/76‑3 (MQ=255) cTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGttt < 1:369263/76‑1 (MQ=255) cTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGttt < 1:3761179/76‑1 (MQ=255) cTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGttt < 1:4149670/76‑1 (MQ=255) cTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGttt < 2:1304825/76‑1 (MQ=255) cTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGttt > 2:5795523/1‑76 (MQ=255) ttCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTg > 1:3380314/1‑76 (MQ=255) tCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGc > 2:3217357/1‑76 (MQ=255) tATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCcg < 2:5362188/76‑1 (MQ=255) tATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCcg < 2:4935850/76‑1 (MQ=255) aTTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCcgc > 1:674506/1‑76 (MQ=255) aTTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCcgc < 1:2073931/76‑1 (MQ=255) aTTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCcgc > 2:6371796/1‑76 (MQ=255) aTTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCcgc > 2:1477168/1‑76 (MQ=255) tttCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCCGCGt < 2:692174/76‑1 (MQ=255) tCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCCGCGttt > 1:7061314/1‑76 (MQ=255) tCTGGTGAATGTCGGGCTGTTGGGGGCTGGATATCTTAACGTCCATCCGCTCCTCAAGTTGGTGTTTGCCGCtttt < 2:7026712/76‑1 (MQ=255) cTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCCGCGTTTc > 1:6842964/1‑76 (MQ=255) tGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCCGCGTTTct < 1:7295820/76‑1 (MQ=255) tGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCCGCGTTTct < 2:5711483/76‑1 (MQ=255) gTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCCGCGTTTctgc < 1:1451618/76‑1 (MQ=255) gTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGCTTGCCGCGTTTctgc < 2:2394218/76‑1 (MQ=255) tAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCCGCGTTTctgctg > 1:4952425/1‑76 (MQ=255) tAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCCGCGTTTctgctg < 2:4265142/76‑1 (MQ=255) aaGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCCGCGTTTCTGCTGa > 1:1852918/1‑76 (MQ=255) aGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCCGCGTTTCTGCTGAt < 1:6069542/76‑1 (MQ=255) gTTCGGCCTGTTGTGGGCGGGGTATCTTAACTTCCATCCCCTCCTCCATTTGGTGTTTGCCGCGTTTTTGCTGATg > 2:2817590/1‑76 (MQ=255) gTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCCGCGTTTCTGCTGATg > 1:1403744/1‑76 (MQ=255) gTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCCGCGTTTCTGCTGATg > 1:6482381/1‑76 (MQ=255) gTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCCGCGTTTCTGCTGATg < 2:115327/76‑1 (MQ=255) gTTCGGCCCGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCACTTTGGGGTTTGCCGCGTTTCTGCTGATg > 2:4394506/1‑76 (MQ=255) cGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCCGCGTTTCTGCTGATGccc > 2:298049/1‑76 (MQ=255) | TACTGCCATGCCTTCTTCCCTCTGGCAATACTGGCGCGGCCTTTCCGGCT‑GGAACTTCTATTTTCTGGTTAAGTTCGGCCTGTTGTGGGCGGGATATCTTAACTTCCATCCGCTCCTCAATTTGGTGTTTGCCGCGTTTCTGCTGATGCCC > REL606/3627726‑3627876 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |