Predicted mutation
evidence seq id position mutation annotation gene description
RA REL606 4,553,689 A→G pseudogene (2144/3255 nt) yjiV → b4486; conserved protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*REL6064,553,6890AG100.0% 819.4 / NA 196pseudogene (2144/3255 nt)yjiVb4486; conserved protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (65/131);  total (65/131)

Only 100 of 225 total aligned reads displayed.

GATTTGCTGGATCGCAAAGTGGCGCTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGAAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTCGCCGGGCGATTAA  >  REL606/4553616‑4553761
                                                                         |                                                                           
  tttGCTGGATCGCAAAGTGGCGCTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGagag                                                                         <  1:6521593/76‑1 (MQ=255)
  tttGCTGGATCGCAAAGTGGCGCTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGagag                                                                         <  2:7968910/76‑1 (MQ=255)
   ttGCTGGATCGCAAAGTGGCGCTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGgagaga                                                                        <  2:6179339/76‑1 (MQ=255)
       tGGATCGCAAAGTGGCGCTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACAtt                                                                    <  1:6783816/76‑1 (MQ=255)
       tGGATCGCAAAGTGGCGCTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACAtt                                                                    <  1:5508725/76‑1 (MQ=255)
       tGGATCGCAAAGTGGCGCTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACAtt                                                                    <  2:5187762/76‑1 (MQ=255)
       tGGATCGCAAAGTGGCGCTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACAtt                                                                    <  2:7741253/76‑1 (MQ=255)
       tGGATCGCAAAGTGGCGCTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACAtt                                                                    <  2:4411918/76‑1 (MQ=255)
         gATCGCAAAGTGGCGCTGGCTTGGCTTGGCGATGGCTTCACGTATTACATCGGTTTAACGGATGGGGGGACATtct                                                                  >  2:1877492/1‑76 (MQ=255)
          aTCGCAAAGTGGCGCTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATtctc                                                                 <  2:4113868/76‑1 (MQ=255)
           tCGCAAAGTGGCGCTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCg                                                                <  2:7263481/76‑1 (MQ=255)
             gCAAAGTGGCGCTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCt                                                             <  1:410938/76‑1 (MQ=255)
             gCAAAGTGGCGCTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCt                                                             <  2:607685/76‑1 (MQ=255)
              cAAAGTGGCGCTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTg                                                            <  1:7023810/76‑1 (MQ=255)
              cAAAGTGGCGCTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTg                                                            <  1:2894700/76‑1 (MQ=255)
               aaaGTGGCGCTGGCTTGGCTTTGCGATGACTTCACGTATTTCATCGGTTTACCGGATGGGGAGACATTTTtgctgc                                                          >  1:5920984/1‑76 (MQ=255)
               aaaGTGGCGCTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGGGAGACACTCTCGCTGc                                                          >  1:1821026/1‑76 (MQ=255)
                   tGGCGCTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGa                                                      <  2:5305620/76‑1 (MQ=255)
                    ggCGCTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGAt                                                     <  1:1559729/76‑1 (MQ=255)
                        cTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGGGAGACATTCTCGCTGCCGGGTGccc                                                 >  1:4629637/1‑76 (MQ=255)
                        cTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGccc                                                 <  2:3538301/76‑1 (MQ=255)
                         tggcttggctTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGGGGGAAATTCTCGCCTGCCGGTGGccc                                                 >  2:2934491/1‑76 (MQ=255)
                         tggcttggctTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGGGAGACATTTTCGCCGCCGGGTGTCCg                                                >  1:742527/1‑76 (MQ=255)
                         tggcttggctTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGGTGcccc                                                >  1:5894906/1‑75 (MQ=255)
                          ggcttggcttGGCGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGc                                               <  1:1213268/76‑1 (MQ=255)
                           gcttggcttgGCGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACCTTCTCGCTGCCCGGAGGccccc                                               >  2:2263365/1‑74 (MQ=255)
                            cttggcttggCGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGcca                                             >  2:7915603/1‑74 (MQ=255)
                            cttggcttggCGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTa                                             <  2:7601247/76‑1 (MQ=255)
                            cttggcttggCGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTa                                             <  2:5940945/76‑1 (MQ=255)
                             ttggcttggcGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTAc                                            <  2:4251524/76‑1 (MQ=255)
                              tggcttggcGATGACTTCACGTATTACATCGGTTTACCGGATGGGGAGACATTCTCGCTGCCGGATGGCCCCCACt                                          >  2:5513750/1‑76 (MQ=255)
                              tggcttggcGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGGCCGCtccc                                           >  1:3533928/1‑73 (MQ=255)
                              tggcttggcGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACt                                          <  2:3932470/76‑1 (MQ=255)
                               ggcttggcGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTg                                         <  1:3093249/76‑1 (MQ=255)
                               ggcttggcGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTg                                         >  1:2248182/1‑76 (MQ=255)
                               ggcttggcGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCCACTg                                         >  1:3456946/1‑76 (MQ=255)
                                 cttggcGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGcc                                       >  1:7081475/1‑76 (MQ=255)
                                 cttggcGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCCCTGCCGGATGCCCCCCACTTcc                                       >  1:3200152/1‑76 (MQ=255)
                                   tggcGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCCACCGcccc                                     >  1:10726/1‑75 (MQ=255)
                                    ggcGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTg                                    <  2:121648/76‑1 (MQ=255)
                                    ggcGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTg                                    <  2:6627701/76‑1 (MQ=255)
                                    ggcGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTg                                    <  1:6417955/76‑1 (MQ=255)
                                    ggcGATGACGTCACGTATTGCATCGGTTTACCGGATGGAGATACATTCGCCCTGCCGGATCCCCGCTACTGCCCTg                                    <  2:4849468/76‑1 (MQ=255)
                                     gcGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTgg                                   <  1:1356297/76‑1 (MQ=255)
                                     gcGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTgg                                   <  1:2617317/76‑1 (MQ=255)
                                      cGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGgc                                  <  2:4740079/76‑1 (MQ=255)
                                      cGATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGgc                                  >  1:336561/1‑76 (MQ=255)
                                       gATGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGgcg                                 <  1:1621643/76‑1 (MQ=255)
                                        aTGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCCCTAATGCCCCGgcgc                                >  2:6275141/1‑76 (MQ=255)
                                         tGACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCt                               <  2:3440718/76‑1 (MQ=255)
                                          gACTTCACGTATTACATCGGTTTACCGGATGGAGAGCCATTCTCTCTGCCGGATGCCCGCTACTGCCCTGGCGCTa                              <  2:232473/76‑1 (MQ=255)
                                          gACTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTa                              <  1:5020566/76‑1 (MQ=255)
                                            cTTCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTAtt                            >  1:417333/1‑76 (MQ=255)
                                             ttCACGTATTACATCGTTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTg                           <  1:4719239/76‑1 (MQ=255)
                                             ttCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTg                           <  1:7075416/76‑1 (MQ=255)
                                             ttCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTg                           <  2:6357624/76‑1 (MQ=255)
                                              tCACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTgg                          <  1:1321240/76‑1 (MQ=255)
                                               cACGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGc                         <  2:848355/76‑1 (MQ=255)
                                                 cGTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGa                       >  1:1516915/1‑76 (MQ=255)
                                                 cGTATTACATCGGTTTACCAGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACGGCCCTGGCGCTATTGGCGa                       >  2:3861422/1‑76 (MQ=255)
                                                  gTATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGAt                      <  1:3748801/76‑1 (MQ=255)
                                                   tATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATa                     <  1:467036/76‑1 (MQ=255)
                                                   tATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATa                     <  1:236929/76‑1 (MQ=255)
                                                   tATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATa                     <  1:3520244/76‑1 (MQ=255)
                                                   tATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATa                     <  1:7404089/76‑1 (MQ=255)
                                                   tATTACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCCGCCCCGCCCTGGCGCTATTGGCGGTa                     >  1:7321090/1‑76 (MQ=255)
                                                     ttACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACATCCCTTGGCGCATTTGGGGAtgg                    >  2:31387/1‑74 (MQ=255)
                                                     ttACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACg                   <  2:4884617/76‑1 (MQ=255)
                                                      tACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGa                  <  2:7513830/76‑1 (MQ=255)
                                                      tACATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTAACGCCCCGGCGCTATTTGCGATAAGa                  >  2:2518729/1‑76 (MQ=255)
                                                       acgtCGGTTTACCGGTTGTAGAGACATTCTCGTTGCGGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGAt                 <  2:1634374/73‑1 (MQ=255)
                                                       aCATCGGTTTACCGTATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGAt                 <  1:5719070/76‑1 (MQ=255)
                                                       aCATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCCGGCGCTATTGGCGATACgct                 >  2:2798328/1‑74 (MQ=255)
                                                        cATCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGAtt                <  2:722507/76‑1 (MQ=255)
                                                         aTCGTTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTc               <  2:448575/76‑1 (MQ=255)
                                                         aTCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTc               <  2:6742473/76‑1 (MQ=255)
                                                         aTCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTc               <  1:3818859/76‑1 (MQ=255)
                                                         aTCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTc               >  1:3954798/1‑76 (MQ=255)
                                                          tCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTCg              <  2:1684419/76‑1 (MQ=255)
                                                          tCGGTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTCg              <  1:5206909/76‑1 (MQ=255)
                                                            ggTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTTGcc            >  2:6847151/1‑76 (MQ=255)
                                                            ggTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTCGcc            <  2:2675541/76‑1 (MQ=255)
                                                            ggTTTACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTCGcc            <  2:2365121/76‑1 (MQ=255)
                                                              tttACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGAAACGATTCGCCgg          >  2:7929310/1‑76 (MQ=255)
                                                                tACCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCCGGCGCTATTGGCGATACGATTTGCCcggg        >  2:7366850/1‑75 (MQ=255)
                                                                 aCCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTCGCCGGGCg       <  1:6101042/76‑1 (MQ=255)
                                                                 aCCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTCGCCGGGCg       <  1:7716443/76‑1 (MQ=255)
                                                                 aCCGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTCGCCCGGCg       >  2:5643852/1‑76 (MQ=255)
                                                                   cGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTCGCCGGGCGAt     <  2:3277529/76‑1 (MQ=255)
                                                                   cGGATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTCGCCCGGCGAt     >  2:5439488/1‑76 (MQ=255)
                                                                   cGGATGGAGACACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTCGCCGGGCGAt     <  2:4313924/76‑1 (MQ=255)
                                                                    ggatggatAGCCATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTCGCCGGGCGAtt    <  2:1520356/76‑1 (MQ=255)
                                                                    ggATGGAGAGACATTCTCGCTGCCGGATGCCCGCTGCTGCCCTGGCGCTATTGGCGATACGATTCGCCGGGCGAtt    <  2:7839990/76‑1 (MQ=255)
                                                                     gATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTCGCCGGGCGATTa   <  2:7890942/76‑1 (MQ=255)
                                                                     gATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTCGCCGGGCGATTa   >  1:2110217/1‑76 (MQ=255)
                                                                     gATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTCGCCGGGCGATTa   <  2:5755911/76‑1 (MQ=255)
                                                                     gATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTCGCCGGGCGATTa   >  1:19711/1‑76 (MQ=255)
                                                                     gATGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTCGCCGGGCGATTa   >  1:433512/1‑76 (MQ=255)
                                                                      aTGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTCGCCGGGCGATTaa  <  1:4472431/76‑1 (MQ=255)
                                                                      aTGGAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTCGCCGGGCGATTaa  <  1:6284297/76‑1 (MQ=255)
                                                                         |                                                                           
GATTTGCTGGATCGCAAAGTGGCGCTGGCTTGGCTTGGCGATGACTTCACGTATTACATCGGTTTACCGGATGAAGAGACATTCTCGCTGCCGGATGCCCGCTACTGCCCTGGCGCTATTGGCGATACGATTCGCCGGGCGATTAA  >  REL606/4553616‑4553761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: