| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 1,345,210 | (T)8→7 | intergenic (‑98/+137) | yciR ← / ← rnb | modulator of Rnase II stability/exoribonuclease II |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,345,203 | 0 | T | . | 96.5% | 128.2 / ‑2.7 | 29 | intergenic (‑91/+144) | yciR/rnb | modulator of Rnase II stability/exoribonuclease II |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base . (8/20); total (9/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.10e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 | |||||||||||
TAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGTTTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAGTCAGTTAAAAAA > REL606/1345130‑1345274 | tAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGttt < 2:39392/76‑1 (MQ=255) aaCAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGtttt < 1:908481/76‑1 (MQ=255) aGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGttttttt < 2:601813/76‑1 (MQ=255) cGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGtttttttat < 2:1131862/76‑3 (MQ=255) ggAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAAAGCAATGtttttttttt > 1:472974/1‑74 (MQ=255) gTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTatatat < 1:285867/76‑1 (MQ=255) tCCGCGGTTAAATANAAGGAACAACATGACTTACATGAAATTTACGGCGGCTAAACGCATCG‑TCTTTTTatatatn < 1:1044210/76‑2 (MQ=255) cgcgGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATAtattta < 1:694821/76‑1 (MQ=255) ggTTAAATAAANGGNACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑GCTTTTTATCTatttattt < 2:190847/76‑1 (MQ=255) ttAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGt < 2:598913/76‑1 (MQ=255) aaatagaAGGAACAACATGACTTACATGAAATTAACGGCGGGCACAAGATTTGTTTTTTTT‑TATTTTTTTTTGtta > 1:80092/1‑74 (MQ=255) taaaAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATGTATTTGTAATcc < 2:46706/76‑1 (MQ=255) aaaGGAACAACATGACTTACATGAAATTAACGGCGGCTAAATGCATTG‑TTTTTTNATATATTTTTNTGTTATCCAg < 2:1196116/76‑1 (MQ=255) gAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGtttt < 1:708894/76‑1 (MQ=255) gAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGtttt < 1:312649/76‑1 (MQ=255) gAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGtttt < 1:333301/76‑1 (MQ=255) aacaTGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGaa < 2:431445/76‑1 (MQ=255) aacaTGACTTACATGAAATTAACGGCGGCCAAAAGCATTGGTTTTTTTTTTTTTTATTTTTTAATCAATTTTTGGa > 1:347697/1‑76 (MQ=16) aTGACTTACATGAAATTAACGGCGGCTAAAAGCATTGTTTTTTTTTTTTTTTTTTTTTTATTCCGTTTTTGGaaaa > 1:924612/1‑76 (MQ=255) ttACATGAAATNAANGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCTAGTTTTGGAAATACGCCa < 2:185605/76‑1 (MQ=255) aTGAAATTAACGGCGGCTANANGCATTG‑TNTTTTTATATATTTGTTTGTAANCCNGTTTTGGAAAAACGCCAGttt < 2:175379/76‑1 (MQ=255) tGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGtttt < 2:376937/76‑1 (MQ=255) gAAATTAACGGNGGNTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTCGGAAAAACTCCAGTTTTc < 2:186277/76‑1 (MQ=255) aaaTTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCa < 2:832670/76‑1 (MQ=255) ggcggcTAAACGGATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAg > 2:48039/1‑76 (MQ=255) cggcTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAGTc > 1:557071/1‑76 (MQ=255) ggcTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAGTCa > 1:909298/1‑76 (MQ=255) gcTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAGTCAg > 1:408785/1‑76 (MQ=255) gcTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAGTCAg > 2:510408/1‑76 (MQ=255) tAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAGTCAGtt > 2:86763/1‑76 (MQ=255) tAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAGTCAGtt < 1:705189/76‑1 (MQ=255) aaaCGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAGTCAGTTa > 1:899820/1‑76 (MQ=255) aaaCGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAGTCAGTTa < 1:625659/76‑1 (MQ=255) aaaCCCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGGAAGTCAGTTa > 1:1114423/1‑76 (MQ=255) cGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAGTCAGTTaaaa < 2:1116924/76‑1 (MQ=255) cATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAGTCAGTTaaaaaa < 1:615269/76‑1 (MQ=255) | TAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGTTTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAGTCAGTTAAAAAA > REL606/1345130‑1345274 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |