| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2583007 = | 542 (2.210) | 117 (0.500) | 4/144 | 18.0 | 18.5% | intergenic (‑177/+275) | iscR/yfhQ | DNA‑binding transcriptional repressor/predicted methyltransferase |
| ? | REL606 | = 2583279 | 511 (2.170) | intergenic (‑449/+3) | iscR/yfhQ | DNA‑binding transcriptional repressor/predicted methyltransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 514 total aligned reads displayed.
GCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGG > REL606/2583208‑2583354 | gCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGtt < 2:906596/76‑1 (MQ=31)gCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGtt < 2:6025192/76‑1 (MQ=31) ccTTATCCGACCTACGTTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTa < 1:5358776/76‑1 (MQ=17) ccTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTggcg > 1:7379835/1‑73 (MQ=1) ccTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTa < 2:7678162/76‑1 (MQ=32) ccTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTa < 1:4079097/76‑1 (MQ=32) ccTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTa > 2:3834801/1‑76 (MQ=32) ccTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTa < 2:4586829/76‑1 (MQ=32) cTTATCCGCCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTAt < 2:1612474/76‑1 (MQ=21) ttATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTAtt < 2:7080798/76‑1 (MQ=35) ttATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGGTAtt > 2:2843046/1‑76 (MQ=17) ttATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGGTAtt > 2:2087698/1‑76 (MQ=17) ctATCCGACCTACGGTTCTGTTCACTGTAGTCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTAtt < 2:5166222/75‑1 (MQ=255) atATCCGACCTGTGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTAtt < 2:8109624/75‑1 (MQ=255) aTCCGGCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCg < 2:5947987/76‑1 (MQ=255) aTCCGCCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCg < 2:2177089/76‑1 (MQ=255) aTCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCg < 2:3871661/76‑1 (MQ=39) aTCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCg < 1:1728043/76‑1 (MQ=39) aTCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGGTATTCg > 2:6717908/1‑76 (MQ=25) aTCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCACATCAGGCAACGGCTGTTATTCg < 2:3485263/76‑1 (MQ=255) tCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCgg < 2:6315640/76‑1 (MQ=40) tCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCgg < 2:2486168/76‑1 (MQ=40) ccGACCTATGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGc < 2:7200904/76‑1 (MQ=255) cgcccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGcc < 1:1105945/73‑1 (MQ=255) gcccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCt < 2:1065586/74‑1 (MQ=255) gccTAGGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCtt < 2:7318102/75‑1 (MQ=255) aCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGACtt > 1:1353433/1‑76 (MQ=255) ccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTg < 2:4467655/76‑1 (MQ=255) tACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGtt < 1:3784362/76‑1 (MQ=255) tACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGtt < 1:7600662/76‑1 (MQ=255) aCGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCTGCCTTGttt > 2:4651932/1‑75 (MQ=255) gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCt < 1:6389026/76‑1 (MQ=255) ttCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCtt < 2:7836374/76‑1 (MQ=255) ttCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCtt < 1:3977195/76‑1 (MQ=255) ttCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCtt < 1:6202604/76‑1 (MQ=255) tGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTAt < 1:7104648/76‑1 (MQ=255) gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTTGGCCTTGTTACCTTTAtt > 1:2100615/1‑76 (MQ=255) gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCAGCCTTGTTACCTTTAtt > 1:7487696/1‑76 (MQ=255) gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGGTATTCGGGCTTGTTAACTTTAtt > 2:3656559/1‑76 (MQ=17) cACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTTCCTTTATTctg < 1:3623815/76‑1 (MQ=255) cACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctg < 2:4365876/76‑1 (MQ=255) cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctgct > 2:2206235/1‑76 (MQ=255) tGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTTTTCCGGCTTGTTTCCTTTATTctgctg > 2:1855959/1‑76 (MQ=18) tGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctgctg < 1:3272334/76‑1 (MQ=255) tGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGGTATTCGGCCTTGTTACCTTTATTttgctg > 2:4746220/1‑76 (MQ=255) ggTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctgctg < 1:3421193/75‑1 (MQ=255) gTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTTGGCCTTGTTTCCTTTTTTTttctgc > 2:6828300/1‑76 (MQ=17) gTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGGCTTGTTACCTTTATTCttctgc > 2:5594720/1‑76 (MQ=255) tAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTgctgct > 2:3733604/1‑76 (MQ=255) tAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTgctgct < 2:1293601/76‑1 (MQ=255) tAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGGTATTTGGCCCTGTTAACTTTATTCTgctgct > 2:795975/1‑76 (MQ=18) aGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTc < 1:7212534/76‑1 (MQ=255) aGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTc < 1:6581685/76‑1 (MQ=255) ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCa < 1:6334756/76‑1 (MQ=255) ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCa < 2:5840576/76‑1 (MQ=255) ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCa < 1:1829475/76‑1 (MQ=255) gCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCaa < 1:201538/76‑1 (MQ=255) gCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCaa < 2:6970825/76‑1 (MQ=255) cTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATa < 2:1949340/76‑1 (MQ=255) cTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATa > 1:8132466/1‑76 (MQ=255) cTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATa > 2:3983790/1‑76 (MQ=255) cTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATa < 1:7941615/76‑1 (MQ=255) tGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAg < 1:2789688/76‑1 (MQ=255) tGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAg < 1:1635913/76‑1 (MQ=255) gATAAGACGCGTTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGa < 1:4376711/76‑1 (MQ=255) gATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTTGGCCTTGTTACCTTTATTCTGCTGCTCAATAGa > 2:7494948/1‑76 (MQ=255) gATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGGTAATCGCTCCTGCTTCCTTTATTCTGCCGCTTAATaaa > 2:1135326/1‑74 (MQ=9) aTAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGaa < 2:2324727/76‑1 (MQ=255) tAAGACGCATTACGCGTCGCATCAGGCAACGGCTGtt < 2:5347939/37‑1 (MQ=33) tAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAg < 2:4924774/76‑1 (MQ=255) aaGAGGCATTGCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGc < 1:258706/76‑1 (MQ=255) aaGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGGCTTGTTACCTTTATTCTGCTGCTCAATAGAAGc > 2:1430618/1‑76 (MQ=255) aGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGcc < 1:2854663/76‑1 (MQ=255) aGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGcc < 1:6002800/76‑1 (MQ=255) aGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGca < 2:4181141/76‑2 (MQ=255) aCGCGTTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAg < 1:5698407/76‑1 (MQ=255) aCGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAg < 2:3265978/76‑1 (MQ=255) gCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGaa < 1:4503893/76‑1 (MQ=255) cATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAAt < 1:218567/76‑1 (MQ=255) aTTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATc < 1:4630975/76‑1 (MQ=255) tACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATccc < 1:1008997/76‑1 (MQ=255) tACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATccc < 2:6536583/76‑1 (MQ=255) aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCcg < 1:5833796/76‑1 (MQ=255) aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCcg < 1:6731598/76‑1 (MQ=255) cGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAgg > 2:5768522/1‑76 (MQ=255) gCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGa > 1:877106/1‑76 (MQ=255) gCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCCCGCAGGa > 2:2653274/1‑76 (MQ=255) cATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGat < 1:4139792/76‑1 (MQ=255) cATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGat < 1:6958301/76‑1 (MQ=255) aTCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGata < 1:5507434/76‑1 (MQ=255) aTCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGata > 2:7165250/1‑76 (MQ=255) aGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTc < 1:5027545/76‑1 (MQ=255) ggCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCa < 2:8016608/76‑1 (MQ=255) aaCGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACt < 1:2431374/76‑1 (MQ=255) aCGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTc < 1:471188/76‑1 (MQ=255) cGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTcc < 2:3124272/76‑1 (MQ=255) gCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTg < 1:3013984/76‑1 (MQ=255) gCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTg < 1:5213001/76‑1 (MQ=255) cTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTgg < 1:1465256/76‑1 (MQ=255) cTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTgg < 2:1743768/76‑1 (MQ=255) | GCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGG > REL606/2583208‑2583354 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |