| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,875,625 | 1 | . | T | 99.2% | 496.3 / ‑3.3 | 122 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (64/57); total (65/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
Only 100 of 139 total aligned reads displayed.
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695 | aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa > 1:758154/1‑76 (MQ=255) aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt < 2:490080/76‑1 (MQ=255) aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt < 1:2983196/76‑1 (MQ=255) attattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑ttt > 1:3063437/1‑76 (MQ=255) attattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑ttt > 1:146314/1‑76 (MQ=255) ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑tttt > 2:1850501/1‑76 (MQ=255) attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑tttttt > 2:2498888/1‑75 (MQ=255) attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑tttttt > 1:822205/1‑75 (MQ=255) attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑tttttt < 2:2503745/76‑2 (MQ=255) attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑tttttt > 1:2162872/1‑75 (MQ=255) attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑tttttt > 2:4767419/1‑75 (MQ=255) ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑ttttttc < 1:2947898/76‑3 (MQ=255) ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑ttttttc > 1:2256125/1‑74 (MQ=255) tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑ttttttca > 2:627480/1‑73 (MQ=255) aCATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCg > 1:1042213/1‑76 (MQ=255) aCATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCg > 2:478351/1‑76 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTg < 1:3693320/76‑1 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTg > 2:3960847/1‑76 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTg > 1:1641763/1‑76 (MQ=255) aTACGCGTCCTGACTCTAATTTAAGCACGAATCTACACCGCCTCACCTTGCAAAAACTACT‑TTGTTTTGCATCGTg > 2:3960848/1‑76 (MQ=255) tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGa < 1:3807363/76‑1 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGaa > 1:2099775/1‑76 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGaa > 1:1441912/1‑76 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGaa > 1:1054455/1‑76 (MQ=255) cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGaaa > 2:4268232/1‑76 (MQ=255) cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGaaa > 2:2048296/1‑76 (MQ=255) cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATg < 2:641148/76‑1 (MQ=255) gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATgg > 2:2824063/1‑76 (MQ=255) gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATgg > 1:588320/1‑76 (MQ=255) gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATgg > 2:2066082/1‑76 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGAc < 1:4889231/76‑1 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGAc < 1:4429879/76‑1 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGAc < 1:2943796/76‑1 (MQ=255) cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACa < 1:2657240/76‑1 (MQ=255) cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACa > 2:4814292/1‑76 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACag < 1:3440099/76‑1 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACag > 1:3018339/1‑76 (MQ=255) gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACaga > 1:1029126/1‑76 (MQ=255) gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACaga > 2:796918/1‑76 (MQ=255) aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACagag > 2:2143206/1‑76 (MQ=255) cTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAgg < 1:4232933/76‑1 (MQ=255) tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGa < 2:3147904/76‑1 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATa < 1:2510842/76‑1 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATaa > 1:1882381/1‑76 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATaa < 2:3475540/76‑1 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATaa > 2:3292664/1‑76 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATaa > 2:248939/1‑76 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATaa < 2:1174372/76‑1 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATaa > 1:777255/1‑76 (MQ=255) aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATaaa < 1:3200840/76‑1 (MQ=255) tttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAAt < 1:3003353/76‑1 (MQ=255) tttagaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAAtt > 2:3180566/4‑76 (MQ=255) tttagaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAAtt > 2:1656307/4‑76 (MQ=255) ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAAtt < 2:3048570/76‑1 (MQ=255) ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAAtt < 2:2266122/76‑1 (MQ=255) tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTg > 2:4413539/1‑76 (MQ=255) tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTg > 2:2679756/1‑76 (MQ=255) gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGt > 1:4470296/1‑76 (MQ=255) agaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGtt < 2:1381259/76‑1 (MQ=255) agaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGtt > 1:2219782/1‑76 (MQ=255) aCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 2:1451347/76‑1 (MQ=255) aCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 2:4146286/76‑1 (MQ=255) cGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAAt < 2:3761225/76‑1 (MQ=255) cGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAAt > 1:4345302/1‑76 (MQ=255) gAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa > 1:2530067/1‑76 (MQ=255) gAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa > 1:4038555/1‑76 (MQ=255) aaTTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 1:610407/76‑1 (MQ=255) aTTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc > 1:3890489/1‑76 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg < 1:1277434/76‑1 (MQ=255) ttAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg > 1:55802/1‑76 (MQ=255) tAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa > 2:1252163/1‑76 (MQ=255) tAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa > 1:964526/1‑76 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt < 1:3112921/76‑1 (MQ=255) aaCCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt < 1:2192730/76‑1 (MQ=255) aaCCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt < 1:2066082/76‑1 (MQ=255) aaCCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt < 1:661544/76‑1 (MQ=255) aaCCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt < 1:2649707/76‑1 (MQ=255) aaCCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt < 1:3757041/76‑1 (MQ=255) ccGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt < 2:778244/76‑1 (MQ=255) cGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATc > 1:2356004/1‑76 (MQ=255) cTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATccc > 2:2212918/1‑76 (MQ=255) cTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATccc > 2:3558731/1‑76 (MQ=255) ttCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc < 2:4511071/76‑1 (MQ=255) tCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg < 2:4118993/76‑1 (MQ=255) cTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa < 1:74338/76‑1 (MQ=255) tGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg < 2:4692913/76‑1 (MQ=255) tGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 2:188406/1‑76 (MQ=255) gAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa > 2:388325/1‑76 (MQ=255) gAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa < 1:2763898/76‑1 (MQ=255) aaaaaCTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa > 2:41187/1‑76 (MQ=255) aaaaaCTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa < 1:3257475/76‑1 (MQ=255) aaaaCTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 2:4148547/76‑1 (MQ=255) aaaaCTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 1:4758758/76‑1 (MQ=255) aaaaCTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 2:5017898/76‑1 (MQ=255) aaaCTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc > 2:3239495/1‑76 (MQ=255) cTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 1:4062201/1‑76 (MQ=255) cTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 1:5018752/1‑76 (MQ=255) cTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 1:3126821/1‑76 (MQ=255) cTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 1:1722417/1‑76 (MQ=255) cTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc < 1:716967/76‑1 (MQ=255) | ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |