| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | REL606 | 3,145,983 | Δ9 bp | coding (120‑128/1842 nt) | rpoD → | RNA polymerase sigma factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3145982 | 2 (0.010) | 178 (1.200) | 89/148 | 0.1 | 98.4% | coding (119/1842 nt) | rpoD | RNA polymerase sigma factor |
| ? | REL606 | 3145992 = | 4 (0.030) | coding (129/1842 nt) | rpoD | RNA polymerase sigma factor | |||||
Only 100 of 182 total aligned reads displayed.
GTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3145907‑3145982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGG > REL606/3145992‑3146065 GTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCA < 2:4307324/76‑1 TGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAC < 2:3030432/76‑1 TGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAC < 1:1465604/76‑1 TGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAC > 1:2727415/1‑76 GGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACA > 1:4836388/1‑76 TAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATC > 1:4177953/1‑76 AAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCA < 2:2697591/76‑1 AGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCAT < 2:2298286/76‑1 GGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATC < 1:4577507/76‑1 AGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCA < 1:3546428/76‑1 CAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAA > 1:1051882/1‑76 AAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAAT > 1:2923443/1‑76 AAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAAT < 1:2373833/76‑1 GCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGAT < 1:3927398/76‑1 CTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATC > 1:3284163/1‑76 CTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATC > 2:2597859/1‑76 TATCTGACCTATGCCGAGGTCAATGCCCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCA < 1:3913870/76‑1 TATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCA < 1:949709/76‑1 TATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCA < 1:981491/76‑1 TATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCA < 1:2069772/76‑1 TATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCA < 1:2675085/76‑1 TATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCA < 1:1377484/76‑1 ATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAA < 2:2947106/76‑1 ATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAA < 2:4836388/76‑1 CTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACG > 2:3801616/1‑76 TGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGA > 2:693304/1‑76 TGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGA > 1:2801638/1‑76 TGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGA < 1:3176710/76‑1 GACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGAC > 1:3656375/1‑76 GACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGAC < 1:3826421/76‑1 GACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGAC < 2:4339073/76‑1 GACCTATGCCGAGGCCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGcc > 2:4399352/1‑74 ACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACA > 2:1022309/1‑76 CCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACAT < 1:2563508/76‑1 CTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATG < 1:1274391/76‑1 CTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATG < 1:1338821/76‑1 CTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATG < 1:4740233/76‑1 CTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATG < 1:673702/76‑1 TATGCCGAGGACAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACA < 2:3472982/73‑1 ATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGG < 2:3628977/76‑1 ATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGG < 2:4190291/76‑1 ATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGG < 2:1894941/76‑1 ATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGG < 2:4905835/76‑1 CCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCAT > 2:3439443/1‑76 CGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATT < 2:1901253/76‑1 CGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATT > 2:1347315/1‑76 CGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATT > 2:4240519/1‑76 CGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATT < 1:2210426/76‑1 CGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATT < 1:4089138/76‑1 CGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATT < 1:4623594/76‑1 CGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATT > 1:4952385/1‑76 CGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATT < 1:3134924/76‑1 GAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTC < 1:1144001/76‑1 GAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTC > 1:1742402/1‑76 GGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAG < 2:4699366/76‑1 TCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGT > 2:4908998/1‑76 TCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGT > 1:4525815/1‑76 TCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGT > 2:4713838/1‑76 TCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGT > 2:3774678/1‑76 CAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTG < 2:4688972/76‑1 AATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGA > 2:2732345/1‑76 AATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGA > 1:4276914/1‑76 ATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGAT > 2:4258983/1‑76 ATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGAT > 1:222153/1‑76 CCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAA > 1:2917917/1‑76 CCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAA > 2:1968259/1‑76 CCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAA < 2:5011561/76‑1 ATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGA < 1:2451318/76‑1 TCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAA > 2:668624/1‑76 TGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGC < 1:1487240/76‑1 TGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGC < 2:4868357/76‑1 GCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCA > 2:3959873/1‑76 GCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCA > 2:1702479/1‑76 GCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCA > 1:3555412/1‑76 CCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCAC < 1:2873792/76‑1 CGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACC > 2:2513205/1‑76 GAAGATATCGTCGATTAAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGG > 2:3995453/1‑76 AAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGA < 2:3214208/76‑1 AGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGAT < 2:4806469/76‑1 AGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGAT < 2:2461960/76‑1 AGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGAT < 1:734993/76‑1 AGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGAT < 2:1654130/76‑1 AGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGAT < 2:1303530/76‑1 GATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATG < 2:3140044/76‑1 GATATCGGCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATG < 2:1501763/76‑1 ATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCG < 1:1305196/76‑1 ATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCG < 2:2341718/76‑1 CGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGAT < 2:2177582/76‑1 CGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGAT < 2:2138560/76‑1 ATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCT < 1:716852/76‑1 TCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGA < 2:3187174/76‑1 TCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGA < 2:2675572/76‑1 TCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGA > 2:1112223/1‑76 CAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGAT < 1:4067751/76‑1 GATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGC < 2:629621/76‑1 GATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGC < 1:2082083/76‑1 ATCACATCATCGAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCT > 2:2172770/1‑76 ATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCT > 1:1019764/1‑76 CACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGG > 1:1945923/1‑76 CACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGG > 2:3387937/1‑76 GTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3145907‑3145982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGG > REL606/3145992‑3146065 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |