| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 1951951 = | 140 (0.930) | 3 (0.020) | 3/132 | 12.7 | 2.3% | coding (159/504 nt) | cheW | purine‑binding chemotaxis protein |
| ? | REL606 | = 3717486 | 130 (0.990) | coding (4496/4851 nt) | ECB_03460 | putative adhesin | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 154 total aligned reads displayed.
CTGATGGTTCTATCGACTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGAAACGAAGCAATACAC > REL606/3717411‑3717561 | tggtGGTTCTATCGACTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTcc < 1:3841374/73‑1 (MQ=255) tGATGGTTCTATCGACTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTcc > 2:272584/1‑76 (MQ=255) tGATGGTTCTATCGACTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTcc < 2:3808656/76‑1 (MQ=255) aTGGTTCTATCGACTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGc > 2:4092695/1‑76 (MQ=255) aTGGTTCTATCGACTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGGCTCCGc > 2:801429/1‑76 (MQ=255) ttgTTCTATCGACTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCt < 2:4375417/74‑1 (MQ=255) tGGTTCTATCGACTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCGGCAACGTCTCCGCt < 2:2937438/76‑1 (MQ=255) tGGTTCTATCGACTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCt < 2:3047995/76‑1 (MQ=255) tGGTTCTATCGACTATAGCAATATCACCCTCGGGGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCt < 1:2852038/76‑1 (MQ=255) gggTTCTATCGACTATAGCAATATCGCCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCt < 2:760368/75‑1 (MQ=255) ggTTCTATCGACTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTg < 1:3577514/76‑1 (MQ=255) ggTTCTATCGACTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTg < 2:4240273/76‑1 (MQ=255) ggTTCTATCGACTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTg < 1:3406661/76‑1 (MQ=255) ggTTCTATCGACTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTg < 1:2282909/76‑1 (MQ=255) gTTCTATCGACTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTgg < 1:2411485/76‑1 (MQ=255) ttCTATCGACTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGc > 2:1221153/1‑76 (MQ=255) tATCGACTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTc > 1:264249/1‑76 (MQ=255) tCGACTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTcaa > 1:3586758/1‑76 (MQ=255) cGACTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTcaac < 1:3002720/76‑1 (MQ=255) cGACTATAGCAATATCACCCGCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTcaac < 1:3384051/76‑1 (MQ=255) gACTATAGGAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTcaaca < 1:1324160/76‑1 (MQ=255) cTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTcaacaac > 1:4892790/1‑76 (MQ=255) cTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTcaacaac > 2:2866337/1‑76 (MQ=255) cTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTcaacaac > 1:1457381/1‑76 (MQ=255) cTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGGATCAGCAACGTCTCCGCTGGCGTcaacaac > 2:1250440/1‑76 (MQ=255) taaaGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTcaacaaca < 1:4806217/73‑1 (MQ=255) taGCAATATCCCCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCaacaacaac < 1:4707607/76‑1 (MQ=255) taGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCaacaacaac > 2:2038749/1‑76 (MQ=255) taGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCaacaacaac > 1:4723661/1‑76 (MQ=255) taGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCaacaacaac < 2:1089339/76‑1 (MQ=255) taGCAATACCCCCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCaacaacaac < 1:2033598/76‑1 (MQ=255) aGCAATATCACCCTCGGTGGCGGCAACGGTGTTACAACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAacg < 1:879191/76‑1 (MQ=255) aGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCTTAACAGCAACGTCTCCGCTGGCGTCAACAACAacg < 2:2312072/76‑1 (MQ=255) aGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAacg < 1:2075089/76‑1 (MQ=255) aGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAacg > 1:2559889/1‑76 (MQ=255) aaTATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAacgacg > 1:3968228/1‑76 (MQ=255) aaTATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAacgacg > 1:3520599/1‑76 (MQ=255) aaTATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAacgacg > 1:1719410/1‑76 (MQ=255) aaTATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAacgacg > 1:261771/1‑76 (MQ=255) atatCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGAcgc > 1:2896157/1‑76 (MQ=255) tatCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGGCTCCGCTGGCGTTAACAACAACGAcgcg > 1:369742/1‑76 (MQ=255) cACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTg > 1:2827783/1‑76 (MQ=255) cACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCCGGCGTCCACAACAACGCCCCGGTg > 2:1551101/1‑76 (MQ=255) aCCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGa > 2:1774081/1‑76 (MQ=255) cccTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGaa < 1:4760955/76‑1 (MQ=255) cccTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGaa > 2:2123032/1‑76 (MQ=255) cccTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGaa < 2:573993/76‑1 (MQ=255) ccTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAAc > 1:4597168/1‑76 (MQ=255) cTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACt < 1:2752763/76‑1 (MQ=255) tgggTGGCGGCAAGGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTa < 1:4432786/74‑1 (MQ=255) ggTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTAcg < 2:1902983/76‑1 (MQ=255) ggcggcAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACgcgc > 2:3170887/1‑76 (MQ=255) gccgggAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACgcgc < 1:1081335/74‑1 (MQ=255) cAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAGCGACGCGGTGAACTACGCGCAGTTg > 1:3838824/1‑76 (MQ=255) aaCGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGa > 2:3948051/1‑76 (MQ=255) ggtggtACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGc > 1:1891173/1‑76 (MQ=255) ggtggtACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGc < 1:3307139/76‑1 (MQ=255) gtggtACGACTCGTATCATCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCa < 2:891957/76‑1 (MQ=255) gtggtACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCa > 2:1632646/1‑76 (MQ=255) gtggtACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCa > 1:2525805/1‑76 (MQ=255) gtggtACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGCTGAAGCa > 1:4569947/1‑76 (MQ=255) tggtACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCaa > 2:3362632/1‑76 (MQ=255) ggtACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCaaa < 1:5020122/76‑1 (MQ=255) tACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGc > 1:2210817/1‑76 (MQ=255) tACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGc > 2:3707153/1‑76 (MQ=255) tACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGc > 1:4913248/1‑76 (MQ=255) cGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGt > 2:3967645/1‑76 (MQ=255) cGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGt > 2:2416842/1‑76 (MQ=255) gACTCTTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTg < 2:1627426/76‑1 (MQ=255) gACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTg < 1:1596923/76‑1 (MQ=255) gACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTg > 1:312896/1‑76 (MQ=255) gACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTg > 2:2843472/1‑76 (MQ=255) cTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCa > 2:2549244/1‑76 (MQ=255) cTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCa > 2:3748482/1‑76 (MQ=255) cGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAgg < 1:1784534/76‑1 (MQ=255) gTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGa < 1:506016/76‑1 (MQ=255) tATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGaa > 2:2717577/1‑76 (MQ=255) tATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGaa < 1:1927906/76‑1 (MQ=255) tATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGaa > 2:5016750/1‑76 (MQ=255) tATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGaa < 1:705715/76‑1 (MQ=255) tATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGaa < 2:2507875/76‑1 (MQ=255) tATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGaa < 1:4231939/76‑1 (MQ=255) aTCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGaaa < 2:1736663/76‑1 (MQ=255) aTCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGaaa < 2:3105509/76‑1 (MQ=255) aTCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGaaa < 2:4805356/76‑1 (MQ=255) aTCAGCAACGTCGCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGaaa < 2:306319/76‑1 (MQ=255) tCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGAAAc < 2:111396/76‑1 (MQ=255) aGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGAAACGa > 2:386740/1‑76 (MQ=255) cAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGAAaagaag < 1:3196836/76‑1 (MQ=255) aaCGTCTCCGCTGGCGTCAATAACAACGACGCGGTGCACTACGCGCAGTTGAAGCAAAGCGTGCAGGAAACGAAGc > 2:4765948/1‑76 (MQ=255) gTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGAAACGAAGCAAt > 1:4204233/1‑76 (MQ=255) tctcCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGAAACGAAGCAATa < 1:841808/76‑1 (MQ=255) tctcCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGAAACGAAGCAATa < 1:2765343/76‑1 (MQ=255) tctcCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGAAACGAAGCAATa < 2:467174/76‑1 (MQ=255) ctcCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGAAACGAAGCAATac < 1:3917493/76‑1 (MQ=255) ccGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGAAACGAAGCAATacac > 2:4516492/1‑76 (MQ=255) ccGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGAAACGAAGCAATacac > 2:4571512/1‑76 (MQ=255) ccGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGAAACGAAGCAATacac > 2:4740863/1‑76 (MQ=255) ccGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGAAACGAAGCAATacac > 2:1207284/1‑76 (MQ=255) ccGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGAAACGAAGCAATacac > 2:3610896/1‑76 (MQ=255) | CTGATGGTTCTATCGACTATAGCAATATCACCCTCGGTGGCGGCAACGGTGGTACGACTCGTATCAGCAACGTCTCCGCTGGCGTCAACAACAACGACGCGGTGAACTACGCGCAGTTGAAGCAAAGCGTGCAGGAAACGAAGCAATACAC > REL606/3717411‑3717561 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |