Predicted mutation
evidence seq id position mutation annotation gene description
RA REL606 3,136,084 A→G intergenic (+121/+42) cca → / ← uppP fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase/undecaprenyl pyrophosphate phosphatase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*REL6063,136,0840AG100.0% 526.9 / NA 125intergenic (+121/+42)cca/uppPfused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase/undecaprenyl pyrophosphate phosphatase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (54/71);  total (54/71)

Only 100 of 130 total aligned reads displayed.

AGAGGGTTAGGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGAGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATACACCGCAGCC  >  REL606/3136011‑3136153
                                                                          |                                                                     
agagGGTTAGGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGc                                                                     >  1:133866/1‑76 (MQ=255)
agagGGTTAGGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGc                                                                     >  2:2327693/1‑76 (MQ=255)
 gggggTTAGGGGGGGGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGc                                                                     <  1:4719628/74‑1 (MQ=25)
   gggTTAGGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAg                                                                  >  1:4901731/1‑76 (MQ=255)
     gTTAGGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAggg                                                                >  1:995450/1‑76 (MQ=255)
      ttAGGGTGAGAGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGga                                                               <  2:4703284/76‑1 (MQ=255)
      gtAGGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGga                                                               <  1:2026835/75‑1 (MQ=255)
       tAGGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGgag                                                              >  2:2794017/1‑76 (MQ=255)
        aGGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGgaga                                                             >  1:1540540/1‑76 (MQ=255)
        aGGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGgaga                                                             >  1:4952805/1‑76 (MQ=255)
        aGGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGgaga                                                             >  1:4463809/1‑76 (MQ=255)
         ggggTGGGGGAAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGgaga                                                             <  1:1610174/75‑1 (MQ=25)
          gggTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGaa                                                            <  2:2116430/76‑1 (MQ=255)
          gggTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGaa                                                            <  2:1646250/76‑1 (MQ=255)
          gggTGAGGGAAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGaa                                                            <  2:4402612/76‑1 (MQ=255)
           ggTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGaaa                                                           <  2:4232706/76‑1 (MQ=255)
           ggTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGaaa                                                           <  2:3732594/76‑1 (MQ=255)
             tGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTGCAGGGCGAGGGAGAAAAc                                                         >  1:3091340/1‑76 (MQ=255)
             tGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAAc                                                         >  1:1043015/1‑76 (MQ=255)
             tGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAAc                                                         >  1:3887537/1‑76 (MQ=255)
             tGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAAc                                                         >  1:3489135/1‑76 (MQ=255)
               gggggAACAGACCAGCACCGGTGCGAACAATCCCCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAAccc                                                       <  1:1118416/75‑1 (MQ=37)
               ggggcAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAAccc                                                       <  2:2650250/75‑1 (MQ=255)
               ggggaAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAAccc                                                       <  2:3823156/75‑1 (MQ=255)
                gggcAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCg                                                      <  2:3127149/76‑1 (MQ=255)
                 gggAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCgg                                                     <  2:4031731/76‑1 (MQ=255)
                  ggAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGc                                                    <  2:3120015/76‑1 (MQ=255)
                     aCAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTg                                                 <  2:3647279/76‑1 (MQ=255)
                      cAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGc                                                >  2:340610/1‑76 (MQ=255)
                       aGACCAGCACCGGTGCGAACAATCCCCCCCCCCCCGGCCCTCTCCCTACAGGGCGAGGGACAAAACCCGGCCTGCt                                               <  1:4064259/76‑1 (MQ=38)
                       aGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCt                                               <  2:2934389/76‑1 (MQ=255)
                       aGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCt                                               <  2:2934388/76‑1 (MQ=255)
                          ccAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTccc                                            >  1:2089688/1‑76 (MQ=255)
                          ccAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTccc                                            >  1:2439361/1‑76 (MQ=255)
                           cAGCGCCGTTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCg                                           <  1:4187508/76‑1 (MQ=37)
                           cAGCACCGGTGCGAACAATCGCCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCg                                           <  2:2396056/76‑1 (MQ=38)
                           cAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCg                                           <  2:2485878/76‑1 (MQ=255)
                           cAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCg                                           <  1:3261586/76‑1 (MQ=255)
                             gCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGaa                                         <  2:295549/76‑1 (MQ=255)
                             gCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGaa                                         >  1:473767/1‑76 (MQ=255)
                              cACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAAc                                        >  1:3633358/1‑76 (MQ=255)
                                 cGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCGGGCCTGCCACCGAACCtt                                     >  1:3153653/1‑76 (MQ=37)
                                 cGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCtt                                     <  2:3622509/76‑1 (MQ=255)
                                 cGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCtt                                     <  2:4990797/76‑1 (MQ=255)
                                  ggTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCttt                                    <  2:3252796/76‑1 (MQ=255)
                                   gTGCGAACAATCACCCCCGCCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCtttt                                   <  2:3601082/76‑1 (MQ=255)
                                   gTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCtttt                                   <  2:764975/76‑1 (MQ=255)
                                   gTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCtttt                                   <  1:679557/76‑1 (MQ=255)
                                     gCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTtct                                 >  1:2176016/1‑76 (MQ=255)
                                     gCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTtcc                                 >  2:4313688/1‑75 (MQ=255)
                                      cGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTtctc                                >  2:3951521/1‑76 (MQ=255)
                                      cGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTtctc                                <  2:4072682/76‑1 (MQ=255)
                                      cGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTtctc                                >  2:64496/1‑76 (MQ=255)
                                       gAACAATCCCCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtca                               <  1:3424073/76‑1 (MQ=255)
                                       gAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtca                               <  2:317945/76‑1 (MQ=255)
                                        aaCAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtcaa                              >  2:1561038/1‑76 (MQ=255)
                                        aaCAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtcaa                              >  2:3149503/1‑76 (MQ=255)
                                        aaCAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtcaa                              <  2:457016/76‑1 (MQ=255)
                                        aaCAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtcaa                              <  1:1386484/76‑1 (MQ=255)
                                         aCAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtcaat                             >  1:1683788/1‑76 (MQ=255)
                                         aCAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtcaat                             >  1:4003660/1‑76 (MQ=255)
                                         aCAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtcaat                             <  1:4986501/76‑1 (MQ=255)
                                           aaTCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtcaatca                           <  1:468616/76‑1 (MQ=255)
                                           aaTCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtcaatca                           >  2:724086/1‑76 (MQ=255)
                                             tCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCaaa                         <  1:1955336/76‑1 (MQ=255)
                                              cccccccaccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCaaaa                        <  1:2992580/74‑1 (MQ=255)
                                              cacccccaccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCaaaa                        >  2:1522804/1‑76 (MQ=255)
                                               acccccaccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAg                       >  2:4624190/1‑76 (MQ=255)
                                               acccccaccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAg                       <  1:4954448/76‑1 (MQ=255)
                                                 ccccaccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGaa                     <  1:331039/76‑1 (MQ=255)
                                                  cccaccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAac                    <  1:3243118/76‑1 (MQ=255)
                                                  cccaccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAac                    >  1:1970146/1‑76 (MQ=255)
                                                    caccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAacac                  >  2:5005597/1‑76 (MQ=255)
                                                    caccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAacac                  >  2:4421172/1‑76 (MQ=255)
                                                     accccGGCCCTCTCCCTACAGGGCGAGGGAGAAATCCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACg                 <  1:2914457/76‑1 (MQ=255)
                                                     accccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACg                 >  1:4294288/1‑76 (MQ=255)
                                                      ccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGa                <  1:2864564/76‑1 (MQ=255)
                                                      ccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGa                <  1:3705804/76‑1 (MQ=255)
                                                      ccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGa                >  2:4684635/1‑76 (MQ=255)
                                                        ccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACa              <  1:3086149/76‑1 (MQ=255)
                                                         cGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACAt             <  1:3026184/76‑1 (MQ=255)
                                                          ggCCCTCTCCCTACAGGGCGAGGGAGAAATCCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATa            <  1:865302/76‑1 (MQ=255)
                                                          ggCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATa            <  1:1095069/76‑1 (MQ=255)
                                                          ggCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATa            <  2:2603766/76‑1 (MQ=255)
                                                           gCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATac           <  2:3768730/76‑1 (MQ=255)
                                                            cccTCTCCCTACAGGGCGGGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATaca          <  2:4588269/76‑1 (MQ=255)
                                                            cccTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATaca          >  2:2851025/1‑76 (MQ=255)
                                                            cccTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATaca          >  2:2631024/1‑76 (MQ=255)
                                                            cccTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATaca          >  2:4741764/1‑76 (MQ=255)
                                                            cccTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATaca          <  2:3209185/76‑1 (MQ=255)
                                                            cccTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATaca          >  1:2221399/1‑76 (MQ=255)
                                                             ccTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATacac         <  1:3886851/76‑1 (MQ=255)
                                                             ccTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATacac         <  2:510347/76‑1 (MQ=255)
                                                             ccTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATacac         <  2:3978915/76‑1 (MQ=255)
                                                              ctctCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATACAcc        >  2:2802677/1‑76 (MQ=255)
                                                              ctctCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATACAcc        <  2:2759085/76‑1 (MQ=255)
                                                              ctctCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTCTCTCAATCAAAAGAACACGACATACAcc        >  2:3701718/1‑76 (MQ=255)
                                                               tctcCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATACACCg       <  2:4645795/76‑1 (MQ=255)
                                                                 tcCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATACACCGCa     <  2:333911/76‑1 (MQ=255)
                                                                 tcCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATACACCGCa     <  1:2540090/76‑1 (MQ=255)
                                                                          |                                                                     
AGAGGGTTAGGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGAGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATACACCGCAGCC  >  REL606/3136011‑3136153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: