| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,570,568 | (T)8→7 | intergenic (‑159/‑232) | yhiO ← / → uspA | universal stress protein UspB/universal stress global response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,570,561 | 0 | T | . | 98.6% | 1048.9 / 6.6 | 210 | intergenic (‑152/‑239) | yhiO/uspA | universal stress protein UspB/universal stress global response regulator |
| Reads supporting (aligned to +/- strand): ref base T (1/2); new base . (90/117); total (91/119) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 | |||||||||||
Only 100 of 239 total aligned reads displayed.
CCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTGTTTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGGGTAAGCAAG > REL606/3570486‑3570632 | ccAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGgttgt > 1:7037197/1‑76 (MQ=255)ccAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGgttgt < 1:2166946/76‑1 (MQ=255) cAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGgttgtt > 2:5147861/1‑76 (MQ=255) cAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGgttgtt < 1:329556/76‑1 (MQ=255) cAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGgttgtt < 1:2670548/76‑1 (MQ=255) gtgcTGGAGAAACCGCTTTTGTGGGGACCAACATCCGAGCGTCTCTATAGATAGTGTAGGAGATCAGGTTGttttt < 2:7048139/73‑1 (MQ=255) gTCCTGGAGAAACCGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTGttttt > 2:2139177/1‑76 (MQ=255) gTCCTGGAGAAACCGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTGttttt > 2:3386473/1‑76 (MQ=255) gTCCTGGAGAAACCGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTGttttt > 2:632917/1‑76 (MQ=255) ccTGGAGAAACCGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTGttttttt < 2:4603844/76‑1 (MQ=255) cTGGAGAAACCGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTGtttttttc > 1:3105165/1‑75 (MQ=255) tGGAGAAACCGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTGtttttttcc < 2:2589792/76‑3 (MQ=255) tGGAGAAACCGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTGtttttttcc > 2:5230083/1‑74 (MQ=255) agaAACCGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGa > 2:484999/1‑76 (MQ=255) gaAACCGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGaa > 2:4712255/1‑76 (MQ=255) gaAACCGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGaa < 1:3842778/76‑1 (MQ=255) aCCGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGt > 2:1035995/1‑76 (MQ=255) ccGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGtt < 1:6903484/76‑1 (MQ=255) cGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTa < 1:6335272/76‑1 (MQ=255) cGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTa > 2:3457362/1‑76 (MQ=255) gCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTaa < 1:650497/76‑1 (MQ=255) gCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTaa < 1:6489460/76‑1 (MQ=255) cTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAAc < 2:6522549/76‑1 (MQ=255) ttttGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAAcc < 2:2199898/76‑1 (MQ=255) ttttGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAAcc > 2:130797/1‑76 (MQ=255) tttGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCa < 2:3900545/76‑1 (MQ=255) tgtgGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACt < 1:4308192/76‑1 (MQ=255) gtggtgACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTa < 1:5853348/76‑1 (MQ=255) gtggtgACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTa > 1:3893103/1‑76 (MQ=255) tggtgACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTAt > 1:1132374/1‑76 (MQ=255) tggtgACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTAt < 2:6073192/76‑1 (MQ=255) tggtgACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTAt < 1:4421698/76‑1 (MQ=255) tggtgACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTAt < 1:4675226/76‑1 (MQ=255) tggtgACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTAt < 2:2251644/76‑1 (MQ=255) ggtgACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATc < 1:757623/76‑1 (MQ=255) gtgACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCa < 1:1862139/76‑1 (MQ=255) gtgACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCa < 1:3726585/76‑1 (MQ=255) gACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAat > 2:4926530/1‑76 (MQ=255) gACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAat > 1:6946738/1‑76 (MQ=255) aCCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAata < 1:1978105/76‑1 (MQ=255) ccAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAatat > 2:5437983/1‑76 (MQ=255) cAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAatata < 1:1528381/76‑1 (MQ=255) cAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAatata < 2:2629252/76‑1 (MQ=255) aaCATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAatatat > 2:3653544/1‑76 (MQ=255) aaCATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAatatat < 2:3117010/76‑1 (MQ=255) aaCATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAatatat > 1:1445597/1‑76 (MQ=255) aaCATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAatatat < 1:1244872/76‑1 (MQ=255) aCATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATAtt > 2:3540899/1‑76 (MQ=255) aCATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATAtt > 2:5608738/1‑76 (MQ=255) aCATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATAtt < 2:6979263/76‑1 (MQ=255) cATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTc > 2:4135788/1‑76 (MQ=255) cATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTc > 1:2538458/1‑76 (MQ=255) aTCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCa < 2:6092720/76‑1 (MQ=255) aTCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCa < 2:1207039/76‑1 (MQ=255) aTCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCa < 1:1801068/76‑1 (MQ=255) tCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCAt < 2:3944773/76‑1 (MQ=255) tCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCAt < 1:1035598/76‑1 (MQ=255) tCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCAt < 1:5977635/76‑1 (MQ=255) ccGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATg < 2:4399133/76‑1 (MQ=255) gAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTc < 1:532657/76‑1 (MQ=255) aGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCg < 1:5811629/76‑1 (MQ=255) gCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGa > 1:2060056/1‑76 (MQ=255) cGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGaa > 2:4232927/1‑76 (MQ=255) cGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGaa > 2:1608364/1‑76 (MQ=255) ggCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGaaa < 1:2570178/76‑1 (MQ=255) gCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGaaaa > 1:3040757/1‑76 (MQ=255) gCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGaaaa < 1:4597083/76‑1 (MQ=255) ctctATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAAt > 2:2893369/1‑76 (MQ=255) ctctATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAAt > 2:2503863/1‑76 (MQ=255) ctctATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAAt > 1:542607/1‑76 (MQ=255) tctATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAAtt > 1:3496344/1‑76 (MQ=255) ctATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAAttt > 1:4763530/1‑76 (MQ=255) tataGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTg > 1:4084821/1‑76 (MQ=255) tataGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTg > 1:6661782/1‑76 (MQ=255) tataGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTg > 1:4980381/1‑76 (MQ=255) tagatagTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGtt < 2:6777804/76‑1 (MQ=255) tagatagTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGtt < 1:6885649/76‑1 (MQ=255) agatagTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGttt > 1:2716354/1‑76 (MQ=255) agatagTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGttt > 1:2987821/1‑76 (MQ=255) agatagTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGttt > 2:4813309/1‑76 (MQ=255) atagTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTAt < 1:2885845/76‑1 (MQ=255) tagTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATc > 2:6258444/1‑76 (MQ=255) tagTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATc > 1:3324619/1‑76 (MQ=255) tagTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATc < 2:1904494/76‑1 (MQ=255) agTGTAGGAGATCAGGTTGTTTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATc > 1:1482715/1‑76 (MQ=255) gtgtAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTa < 2:2735781/76‑1 (MQ=255) gtgtAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTa < 2:4004209/76‑1 (MQ=255) tgtAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTaa > 2:235596/1‑76 (MQ=255) tgtAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTaa > 2:3629046/1‑76 (MQ=255) tgtAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTaa < 2:1131598/76‑1 (MQ=255) tgtAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTaa < 1:5118484/76‑1 (MQ=255) gtAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAAc > 1:6561326/1‑76 (MQ=255) tAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACg > 2:3193672/1‑76 (MQ=255) agaTCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGGGTa < 1:2829520/76‑1 (MQ=255) agaTCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGGGTa < 2:5973044/76‑1 (MQ=255) agaTCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGGGTa < 2:5735717/76‑1 (MQ=255) agaTCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGGGTa < 1:3743820/76‑1 (MQ=255) gaTCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGGGTaa < 1:2728651/76‑1 (MQ=255) tCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGGGTAAGc > 1:4860766/1‑76 (MQ=255) cAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGGGTAAGCa > 2:6463558/1‑76 (MQ=255) | CCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATCCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTGTTTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGGGTAAGCAAG > REL606/3570486‑3570632 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |