| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3737261 | 180 (0.820) | 3 (0.010) | 3/142 | 21.0 | 2.1% | coding (566/1254 nt) | waaL | Lipid A‑core, surface polymer ligase |
| ? | REL606 | = 3737695 | 112 (0.540) | coding (132/1254 nt) | waaL | Lipid A‑core, surface polymer ligase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AATATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3737183‑3737261‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttatATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTCATCTCATT < REL606/3737695‑3737621 AATATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTT > 1:1915505/1‑76AATATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTT < 1:2700594/76‑1AATATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTT > 2:3857154/1‑76 ATATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTTT > 1:2993022/1‑76 ATATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTTT > 1:4590131/1‑76 ATATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTTT < 1:4780788/76‑1 TATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTTTA < 2:5065164/76‑1 TATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTTTA < 1:5642782/76‑1 TATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTTTA > 2:1277859/1‑76 ATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTTTAT < 1:1995560/76‑1 ATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTTTAT < 1:2478616/76‑1 ATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTTTAT < 1:1239759/76‑1 TTAATTGTATATAATGTTGTTTTATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCC > 2:2785650/1‑76 TAATTGTATATAATGTTGTTTTATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCT > 2:211506/1‑76 TGTTTTATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTCA > 2:3411052/1‑76 TTATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTCATCTC > 1:6149340/1‑76 TTATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTCATCTC > 1:7040479/1‑76 TATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTCATCTCA < 1:4874675/76‑1 ATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTCATCTCAT > 2:6394257/1‑76 TATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTCATCTCATT > 2:4896187/1‑76 TATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTCATCTCATT < 1:3921179/76‑1 TATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTCATCTCATT > 2:6971819/1‑76 AATATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3737183‑3737261‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttatATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTCATCTCATT < REL606/3737695‑3737621 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |