Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
JC | REL606 | 3,843,787 | Δ54 bp | coding (251‑304/1404 nt) | dnaA ← | chromosomal replication initiation protein |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3843786 | 4 (0.020) | 174 (0.900) | 84/132 | 0.5 | 98.2% | coding (305/1404 nt) | dnaA | chromosomal replication initiation protein |
? | REL606 | 3843841 = | 3 (0.020) | coding (250/1404 nt) | dnaA | chromosomal replication initiation protein |
Only 100 of 227 total aligned reads displayed.
AACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3843703‑3843786 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtttgcgTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGA > REL606/3843841‑3843915 AACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTG < 1:1031353/76‑1 GATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGT > 1:2885803/1‑76 GATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGT > 2:1419489/1‑76 TAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGGGTTT > 1:1504920/1‑76 TAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGGTT > 1:575118/1‑76 AGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTG > 1:2692293/1‑76 GGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGC < 1:354603/76‑1 GTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCG < 1:3320948/76‑1 CGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTC > 2:5550362/1‑76 TTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCCTCA‑CC > 2:838773/1‑76 TCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCG > 1:4669373/1‑76 TCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCG < 2:6647132/76‑1 TGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGGCA‑CCGGT > 1:952923/1‑76 GCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTT > 2:3906815/1‑76 GCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTT > 2:2394481/1‑76 GCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTT < 1:1747665/76‑1 GCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTT < 1:3851021/76‑1 GCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCCGTT > 2:4564072/1‑76 GGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGGGTTTGCGTAA‑ACGGTTTtg > 2:5743527/1‑74 GGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGGGTCA‑CCGGGTTtg > 2:5384618/1‑74 GGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGG < 1:1833800/76‑1 GGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGG < 1:5998493/76‑1 GGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCCGTTGCGTCACCCGGTTTGtg > 2:4420666/1‑74 CGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCG < 1:704786/76‑1 CGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGGGCCG > 1:2767364/1‑76 CGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGGTTGCGTCA‑CCGGGTTTGTGCCG > 1:145378/1‑76 GGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGGCA‑CCCGTTTGGTGGCGgc > 1:6843659/1‑74 GACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTT > 1:2374069/1‑66 ACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTT < 1:1311919/76‑1 ACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTT > 1:2589693/1‑76 ACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTT < 1:5510726/76‑1 ACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTT < 1:172874/76‑1 ACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGGTTTGTGGCGGCTT > 2:6076821/1‑76 CGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTC < 1:193092/76‑1 CGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGGGCCGACTTC > 1:4772671/1‑76 CGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGGGCCGACTTC > 2:2947165/1‑76 CGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGGTTGGTGCCGGCTTC > 2:6506993/1‑76 TTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAA < 2:3759401/76‑1 TTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGGTTGGTGGCGACTTCAA > 1:43133/1‑76 TATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAA < 1:3271680/76‑1 TATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGGTTGCGTCA‑CCGGTTTGGGGCCGGCTTTAAA > 1:2908954/1‑76 ATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCTGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAA > 1:3968609/1‑76 ATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGGCTTCAAAA > 2:4055938/1‑76 TCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGGCGACTTCAAAAC > 2:4713508/1‑76 CCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGCCTTCAAAACG > 2:6190060/1‑76 CCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACG < 2:774694/76‑1 CCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACG < 1:2204325/76‑1 CCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGGGTTA‑CCGGGTTGGTGCCGACTTCAAAACGa > 2:3021519/1‑75 CCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGC < 2:3468904/76‑1 CAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGAATTTAAAACGCA > 2:6358842/1‑76 TGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGT < 1:2548441/76‑1 TGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAAAGCAGCTGg > 2:581911/1‑75 GAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGGCTTCAAAACGCAGCTGTG > 1:2341569/1‑76 GAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTG > 1:3667441/1‑76 GCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGG < 2:3063816/76‑1 GCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGG < 1:854947/76‑1 GCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGG < 2:1482800/76‑1 CGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGGTTGGTGCCGACTTCAAAAAGCAGCTGTGGGG > 2:235430/1‑76 GTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGGGTCA‑CCGGTTTGGTGCCGACTTGAAAACGCAGCTGTGGGGCAT > 1:3497299/1‑76 GTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑ACGGGTTTGTGGCGACTTCAAAACGCAGCTGTGGGGCAa > 2:411435/1‑75 TAGAAGGCGCAGCACGTTGCGGCTGCGTTTTCGTCA‑CCGGGTTTGTGCCGACTTCAAAACGCAGCTGTGGGGGATC > 2:2085968/1‑76 TAGAAGGCGCAGCACGTTGCGGCTGCGGTTGCGTGT‑CCCGGTTTGTGCCGACTTCAAAACGCAGCTGTGGGGAATC > 1:6919612/1‑76 AGAAGGCGCAGCACGTTGCTGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCC < 1:6971172/76‑1 AGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGGATCC > 1:4989425/1‑76 AGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCC > 2:3202206/1‑76 AGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCC < 1:3084711/76‑1 GAAGGCGCAGCACGTTGCGGCTGCGGTTGCGTCA‑CCGGTTTGGGGCCGACTTCAAAAAGCAGCTGTGGGGCATCCG > 2:4298119/1‑76 AGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCCCT > 2:2590533/1‑76 AGCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAG < 1:4857104/76‑1 GCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGA < 2:1756004/76‑1 GCACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGA > 1:6760819/1‑76 CACGTGGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAA < 2:6395423/76‑1 ACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCCGCTGTGGGGCATCCGCTCCGCAGAAA > 2:1895585/1‑76 ACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAA < 1:6771306/76‑1 ACGTTGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAA > 1:5943236/1‑76 ACGTGGCGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACACAGCTGTGGGGCATCCGCTCCGCAGAAA < 1:4567049/76‑1 CGTTGCGGCTGGGTTTGCGTCA‑CCGGTTTGGGGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAAC > 2:1533772/1‑76 CGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTT < 2:5887549/76‑1 CGGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTT < 2:3585437/76‑1 GGCTGCGTTTGCGTCC‑CCGGTTTGGTGCCGACTTCAAACCGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTA < 2:5454722/76‑1 GGCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTA < 1:5333721/76‑1 GGCTGCGTTTGCGGCA‑CCGGTTTGGTGCCGAGTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGGTA > 2:5128448/1‑76 ggTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAG < 1:3131798/74‑1 GCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAG < 2:2934855/76‑1 GCTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAG < 2:2262704/76‑1 CTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGC > 2:1679417/1‑76 CTGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGC < 1:1334089/76‑1 tcgGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGTTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCA < 2:46375/73‑1 TGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCA > 1:2039690/1‑76 TGCGTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCA < 2:3930915/76‑1 GTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTC > 1:5648088/1‑76 GTTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTC < 1:212290/76‑1 TTTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCC > 1:4170447/1‑76 TTGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCA < 2:6041059/76‑1 TGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCAT < 1:518565/76‑1 TGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCAT > 2:6750689/1‑76 TGCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCAT < 1:1176038/76‑1 GCGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATT > 2:7063509/1‑76 CGTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTG > 1:5369684/1‑76 GTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGA < 2:4887668/76‑1 AACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3843703‑3843786 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtttgcgTCA‑CCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGA > REL606/3843841‑3843915 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |