| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2040186 | 126 (0.570) | 3 (0.010) | 3/140 | 20.9 | 2.8% | intergenic (‑58/+85) | vioB/vioA | VioB, involved in dTDP‑N‑acetylviosamine synthesis/VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | = 2040466 | 94 (0.460) | coding (918/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 105 total aligned reads displayed.
GCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAGGAAAATATGAA > REL606/2040391‑2040541 | gCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGAtatta < 2:5068367/76‑1 (MQ=255)gCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGAtatta < 1:1665286/76‑1 (MQ=255)gCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGAtatta > 2:5904673/1‑76 (MQ=255) cTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGAtattat < 1:4492079/76‑1 (MQ=255) tAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATattatt < 2:1078465/76‑1 (MQ=255) aGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTAttt < 2:4308424/76‑1 (MQ=255) aGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTAttt < 2:2469630/76‑1 (MQ=255) aGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTAttt > 2:551038/1‑76 (MQ=255) gCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTAtttt < 2:804874/76‑1 (MQ=255) cTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTAttttt > 1:3042575/1‑76 (MQ=255) aaaTCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCtt < 1:1813906/76‑1 (MQ=255) aatcaatcCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTa > 2:5976242/1‑76 (MQ=255) aatcaatcCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTa < 2:2124548/76‑1 (MQ=255) aatcaatcCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTa < 2:2393491/76‑1 (MQ=255) atcaatcCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTaa > 1:5812109/1‑76 (MQ=255) atcCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTaa > 2:4315222/1‑76 (MQ=255) ccTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAAtt < 2:2244157/76‑1 (MQ=255) ccTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAAtt > 2:659123/1‑76 (MQ=255) cGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCat < 2:6979907/76‑1 (MQ=255) aTACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCatat < 2:6216785/76‑1 (MQ=255) aCATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGc < 2:2347367/76‑1 (MQ=255) cATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGcc < 1:5280107/76‑1 (MQ=255) cATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGcc > 1:3434017/1‑76 (MQ=255) aTAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCt < 1:6292688/76‑1 (MQ=255) ggCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGAt < 1:6773240/76‑1 (MQ=255) ggCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGAt < 2:5388262/76‑1 (MQ=255) gCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATc < 1:1947754/76‑1 (MQ=255) cATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCa > 2:5511738/1‑76 (MQ=255) cATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCa < 2:1189345/76‑1 (MQ=255) cATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCa > 1:1688682/1‑76 (MQ=255) atatTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCAc > 1:2848947/1‑76 (MQ=255) tatTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACg > 2:1899127/1‑76 (MQ=255) tatTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACg < 2:2120085/76‑1 (MQ=255) tatTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACg > 1:4958989/1‑76 (MQ=255) ttACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGAc > 1:2147820/1‑76 (MQ=255) tACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACt < 2:5878423/76‑1 (MQ=255) tACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACt > 1:1540381/1‑76 (MQ=255) tACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACt > 2:6562098/1‑76 (MQ=255) gATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCata > 1:4363981/1‑76 (MQ=255) aTTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCatat > 2:655507/1‑76 (MQ=255) aTTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCatat < 1:945441/76‑1 (MQ=255) ttAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATg > 1:4552508/1‑76 (MQ=255) ttAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATg > 1:6546798/1‑76 (MQ=255) tAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGa > 1:294954/1‑76 (MQ=255) tAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGa > 1:247947/1‑76 (MQ=255) aaTGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGaa > 1:718467/1‑76 (MQ=255) aTGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGaaa < 1:3750543/76‑1 (MQ=255) tGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGaaaa < 1:1897031/76‑1 (MQ=255) tGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGaaaa < 2:1363405/76‑1 (MQ=255) aTAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACca < 1:3436502/76‑1 (MQ=255) tAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACcat < 2:3336759/76‑1 (MQ=255) tAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACcat < 2:7046707/76‑1 (MQ=255) tAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACcat < 1:6578771/76‑1 (MQ=255) aaaaaTACTTTCGAGATAAGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACcatc > 1:5199487/1‑76 (MQ=255) aaaTACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACcatcat < 2:5021794/76‑1 (MQ=255) aaaTACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACcatcat < 1:4662444/76‑1 (MQ=255) aaTACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCatcatc > 1:2033563/1‑76 (MQ=255) aTACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCt > 1:2413514/1‑76 (MQ=255) aTACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCt > 1:4826039/1‑76 (MQ=255) aTACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCt < 2:432985/76‑1 (MQ=255) tACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTa < 1:5486095/76‑1 (MQ=255) tACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACCACTCATATGAAAGCCATCATCTa < 2:6028254/76‑1 (MQ=255) aCTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTAt > 2:4910292/1‑76 (MQ=255) aCTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTAt < 2:1660282/76‑1 (MQ=255) aCTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTAt > 2:3341480/1‑76 (MQ=255) cTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATg < 1:2061224/76‑1 (MQ=255) cTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATg < 2:4650017/76‑1 (MQ=255) cTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATg < 1:1957921/76‑1 (MQ=255) tttCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGa < 1:2225019/76‑1 (MQ=255) ttCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAg > 2:4776401/1‑76 (MQ=255) ttCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAg < 1:1482934/76‑1 (MQ=255) ttCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAg < 1:4405067/76‑1 (MQ=255) tCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGt < 2:4967071/76‑1 (MQ=255) tCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGt < 1:900860/76‑1 (MQ=255) gagaTAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGtat < 1:1605200/76‑1 (MQ=255) gagaTAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGtat < 1:5123482/76‑1 (MQ=255) agaTAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGtata < 1:1048667/76‑1 (MQ=255) agaTAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGtata > 1:78968/1‑76 (MQ=255) agaTAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGtata > 2:2302835/1‑76 (MQ=255) gaTAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAg > 2:6928350/1‑76 (MQ=255) gaTAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAg < 1:4075493/76‑1 (MQ=255) aTAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAgg > 2:3111314/1‑76 (MQ=255) aTAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAgg > 1:1936694/1‑76 (MQ=255) aTAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAgg < 1:1954248/76‑1 (MQ=255) tAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAGGa > 2:1193631/1‑76 (MQ=255) aGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAGGaa > 1:5906195/1‑76 (MQ=255) aGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAGGaa < 1:2161333/76‑1 (MQ=255) aGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAGGaa < 2:1665393/76‑1 (MQ=255) ggATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAGGaaa < 2:4296804/76‑1 (MQ=255) gATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAGGaaaa < 2:6735758/76‑1 (MQ=255) tattatTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAGGAAAata < 2:3870089/76‑1 (MQ=255) attattTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAGGAAAatat > 2:5788446/1‑76 (MQ=255) attattTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAGGAAAatat > 1:2743077/1‑76 (MQ=255) tattTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAGCCATCATCTATGAGTATAGGAAAATATGa < 1:5944722/76‑1 (MQ=255) tattTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAGGAAAATATGa < 1:5705704/76‑1 (MQ=255) tattTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAGGAAAATATGa < 2:3068518/76‑1 (MQ=255) tattGTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAGGAAAATATGa < 1:4849864/76‑1 (MQ=255) attTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAGGAAAATATGaa > 1:2940864/1‑76 (MQ=255) attTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAGGAAAATATGaa < 1:2266484/76‑1 (MQ=255) attTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAGGAAAATATGaa > 2:2526293/1‑76 (MQ=255) | GCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGACTCATATGAAAACCATCATCTATGAGTATAGGAAAATATGAA > REL606/2040391‑2040541 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |