Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 720,464 | 0 | C | G | 51.8% | 5.1 / 41.8 | 27 | A22G (GCC→GGC) | phrB | deoxyribodipyrimidine photolyase, FAD‑binding |
Reads supporting (aligned to +/- strand): ref base C (2/11); new base G (14/0); total (16/11) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.98e-06 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.27e-03 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 101 total aligned reads displayed.
CAGGAGTTTTATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GCCGCCTG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATAACAT > REL606/720390‑720539 | cAGGAGTTTTATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGct‑gcc < 1:6416049/76‑1 (MQ=255) aGGAGTTTTATGATTACCCATCTGTTGTGGTTTCGCC‑AGGTTTTACGTCTGCACAATAATCTTGCAGTGGct‑gccg < 2:5661244/76‑1 (MQ=255) aGGAGTTTTATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGct‑ggcg > 1:5728356/1‑76 (MQ=255) aGGAGTTTTATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGct‑ggcg > 1:5067937/1‑76 (MQ=255) aGGAGTTTTATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGct‑ggcg > 1:3419563/1‑76 (MQ=255) aGGAGTTTTATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGct‑ggcg > 1:2285388/1‑76 (MQ=255) aGGAGTTTTATGATGGCCCATCTGGTCTGGTTTCGCT‑AGGATTTACGTCGGCACGATAATCTCGCACTGGct‑gccg < 2:5020856/76‑1 (MQ=255) ggATTTTTATGATTCCCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGct‑gccgc < 2:2185953/76‑1 (MQ=255) gAGTTTTATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGct‑ggcgcc > 2:18767/1‑76 (MQ=255) aGTTTTATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGct‑gcggccc > 2:6731898/1‑75 (MQ=255) aGTTTTATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGct‑gccgcct < 1:5274649/76‑1 (MQ=255) aGTTTTATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGct‑gccgcct < 1:1559702/76‑1 (MQ=255) aGTTTTATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGct‑gccgcct < 2:195848/76‑1 (MQ=255) gTTTTATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGct‑gccgcctg < 1:3362271/76‑1 (MQ=255) gTTTTATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGGCTGCACGATAATCTCGCACTGGct‑gccgcctg < 2:490993/76‑1 (MQ=255) ttttATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGct‑ggcgcccg‑c > 1:5743107/1‑76 (MQ=255) ttttATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCCCGCCCGGCct‑gccgcctg‑c < 2:6440301/76‑1 (MQ=255) tttATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGct‑ggggcccg‑cc > 1:4905349/1‑76 (MQ=255) tttATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGct‑ggggcccg‑cc > 1:4271095/1‑76 (MQ=255) tttATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGct‑ggcgcccg‑cc > 1:6890716/1‑76 (MQ=255) tttATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGct‑gccgcctg‑cc < 2:3387839/76‑1 (MQ=255) ttATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGct‑ggcccctc‑ccc > 1:822972/1‑75 (MQ=255) tATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGct‑ggcgcctc‑cccc > 2:2506122/1‑74 (MQ=255) aTGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGct‑ggcgcctg‑ccccc > 1:551216/1‑73 (MQ=255) aCCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGGCCG‑GCCCAATTcct > 1:6805228/1‑74 (MQ=255) aCCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCCG‑CCGCACTTCGt > 1:1326927/1‑76 (MQ=255) ccATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGGCGCCT‑‑CCGCCCTTCGTCt > 2:6233444/1‑76 (MQ=255) ccATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGGGCCGG‑CCGCGAATCGtat > 1:6840840/1‑74 (MQ=255) ccATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGGGCCCG‑CCGCCATTTGTCt > 2:1242500/1‑76 (MQ=255) ccATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCTG‑CCCCCACTCGTCt > 2:3203180/1‑76 (MQ=255) ccATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCCG‑CCGCCATTCGTCt > 2:5540163/1‑76 (MQ=255) ccATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCCG‑CCGCCAATCGTCt > 1:4338118/1‑76 (MQ=255) cATCTGGTCTGGTTTCGCC‑AGGATTTCCGTCGGCACGATAATCCCGCACTGCCT‑CCCCCCTG‑CCGCAATTCGTCTg < 2:5441934/76‑1 (MQ=255) cATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCCG‑CCCCCAATCGTCTg > 1:1089607/1‑76 (MQ=255) aTCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCCG‑CCGCCATTCGTCTGc > 1:3289937/1‑76 (MQ=255) tctggtctggTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCTG‑CCGCCATTCGTCTGcc > 1:4549788/1‑75 (MQ=255) tctggtctggTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCTG‑CCCCCAATCGTCTGcc > 1:6687528/1‑75 (MQ=255) ctggtcggttTTCGCC‑AGGTTTTCCGTCTCCACGATAACCCCCCCCGGGCT‑GCCCCCTG‑CCGCAATTCGTCTGCAc < 1:6762227/76‑1 (MQ=255) tggtttgttTGCGCC‑AGGATTTACGTCTGCACAATAATCTCGCACGGGCT‑CCCCCCTG‑CCGCAATTCGTCTGCAcg < 2:3084328/76‑1 (MQ=255) tggtctggtTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCCG‑GCGCCAATCGTCTGCCcg > 2:3393254/1‑76 (MQ=255) tggtctggtTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCCG‑CCGCCATTCGTCTGcccc > 1:2389126/1‑73 (MQ=255) ggttcttgtTTCGCC‑AGTATTTACTTCAGCACGATAATCCCGCCGTGGCT‑GCCGCCTG‑CCGCAATTCGTCTGCAcg < 1:6850326/73‑1 (MQ=255) ggtctggtTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCTG‑CCGCAATTCGTCTGCAcac > 1:5569052/1‑74 (MQ=255) ggtctggtTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCCG‑CCCCCAATCGTCTGCAcgc > 1:3736649/1‑76 (MQ=255) gtctggtTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGGGCCCG‑CCGCCAATTGTCCGCAcgcg > 1:330995/1‑76 (MQ=255) ggctggtTCCGCC‑AGGTTTTGCGTCCGCACGATAACCCCGCCCTGCCC‑CCCCCCTG‑CCGCAATTCGTCTGCAcgcg < 1:4497098/74‑1 (MQ=255) ggtgtTTCCCC‑AGTTTTTCCTTCTGCAGAATACTCCCGCACGGGCT‑CCCCCCTG‑CCGCAATTCGTCTGCACGCGTg < 1:3589679/73‑1 (MQ=255) ctgttTCCGCC‑GGGTTTTACGTCTGCACAATAATCTCCCACTGGCT‑CCCCCCTG‑CCGCAATTCGTCTGCACGCGTg < 1:302751/76‑1 (MQ=255) ctggtTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCCG‑CCGCAATTCGTCTGCCCGCGTg > 1:2287106/1‑76 (MQ=255) tggtTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCCGCCCCCAATTC‑TCTGCACCCGTGc > 1:6138492/1‑76 (MQ=255) tggtTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCCG‑CCGCCATTCGTCTGCCCGCGTGc > 1:2835341/1‑76 (MQ=255) ggtTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCTG‑CCGCCACTCGTCTGCACGCGTGCt > 1:5208994/1‑76 (MQ=255) ttCGCCAAGGTTTTCCGTCTGCAGGATAATCTCGCACGGGCG‑CCCCCCTG‑CCGCAATTCGTCTGCACGCGTGCTgg < 1:6214465/76‑1 (MQ=255) ttCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCCG‑CCGCCATTCGTCTCCACGCGCGGTGGc > 1:2598951/1‑76 (MQ=255) tCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGGGGCCG‑CCGCCAATCTTCTGCCCGCGGGCCGGCg > 2:2169692/1‑76 (MQ=255) cGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCGC‑CCGCCATTCGTCTGCCCCCGGGCTGGCGt > 2:5323320/1‑76 (MQ=255) c‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCTG‑CCCCAATTCGTCTGCACGCCTGGCGGCGTtat > 2:1746544/1‑76 (MQ=255) aGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCTG‑CCGCCATTCGTCTGCCCGCGTGGTGGGGGtata > 1:2900253/1‑76 (MQ=255) aGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCCG‑CCGCCATTCGTCTGCCCGCGGGCTGGCGTtatt > 1:3593775/1‑75 (MQ=255) aGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCCG‑CCGCAAATCGTCTGCACGCGTGCTGGCGTtata > 1:6923089/1‑76 (MQ=255) tttttGCGCCTGCAGGATAATCCCGCCCGGGCT‑CCCCCCTG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTtatata < 1:13578/74‑1 (MQ=255) gttttCCGTCTGCAAGATAACCCCGCCCTGGCG‑GCCCCCTG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTtatata < 1:6935646/74‑1 (MQ=255) aTTTACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCCG‑CCCCCATTCGTCTGCCCGCCGGCCGGCGTTatatat > 1:6461401/1‑76 (MQ=255) aTTTACGTCTGCACGATAATCTCGCACTGGCC‑CCCCCCTG‑CCGCAATTCGTCTGCACACGTGCTGGCGTTatatat < 2:2013650/76‑1 (MQ=255) tttCCGTCGCCACGATAACCGCGCAGGGGCT‑GCCCCCTG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATc < 2:4209034/76‑1 (MQ=255) tttCCGGCTGCACGATATCCCCGCACGGCCG‑CCCCCCTG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATc < 1:6559018/76‑1 (MQ=255) tttACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCCG‑CCGCCATTCGTCTTCCCGCGTGCTGGCGTTATATATc > 1:1233691/1‑76 (MQ=255) tttACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCCG‑CCGCCAATTGTCTCCCCCCCTGCGGGCGGTttatatt > 2:1475303/1‑75 (MQ=255) tttACGTCTCCACGATACTCCCCCCCGGGCT‑CCCCCCTG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATc < 1:6724007/76‑1 (MQ=255) ttACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCCG‑CCGCCAATTGTCTGCACGCGTGCTGGGGGTatatattg > 1:207186/1‑74 (MQ=255) tACGTCTGCACGATAATCTCGCACTGGCT‑GGCGCCCG‑CCGCCAATCGTCTGCCCGCGGGCTGGCGTTttatattcc > 1:2507670/1‑73 (MQ=255) ccttCTGCTCGAAACTCTCGCGCGGCCC‑CCCGCCTG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCt < 2:5516758/73‑1 (MQ=255) gTCTGCACGATAATCTCGCACTGGCT‑GGCGCCTG‑CCGCCATTCGTCTGCACGCGGGCTGGGGTTATATATCGCTac > 1:2906760/1‑76 (MQ=255) gTCTGCACGATAATCTCGCACTGGCT‑GGCGCCCG‑CCGCAATTCGTCTGCACGCGGGGTGGCGTTATATATCGCTac > 1:3380107/1‑76 (MQ=255) tCTGCAGGATAATCTCGCCCGGGCG‑CCCCCCTG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTaca < 1:2123269/76‑1 (MQ=255) tCTGCACGATAATCTCGCACTGGCT‑GGCGCCTG‑CCGCCAATCGTCTGCACCCCCGCCGGCGGTATATATCTGTaca > 1:1887485/1‑76 (MQ=255) tGCACGATAATCTCGCACTGGCT‑GGCGCCCG‑CCGCAATTCGTCTGCACGCGGGCTGGCGGTATATATCGCTAcacc > 1:3030808/1‑76 (MQ=255) gCACGATAATCTCGCACTGGCT‑GGCGCCCG‑CCGCCATTTGTCTGCACCCGTGCCGGGGTTTTATTTTGCTAcaccc > 2:4018512/1‑75 (MQ=255) ccacaATAATCTCGCCCTGGCC‑CCCCCCTG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTAcacca < 1:2134600/75‑1 (MQ=255) cACGATAATCTCGCACTGGCT‑GGCGCCTG‑CCGCAATTTGTCTGGACGCGCGCTGGGGCTTTTTATCGCTAcacccc > 1:6225561/1‑74 (MQ=255) cACGATAATCCCGCACTGGCG‑CCCCCCTG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTAcaccac < 1:1645536/76‑1 (MQ=255) acagATACTCTCCCTCCGGCC‑CCCCCCTG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTAcaccac < 1:157437/73‑1 (MQ=255) cGATACTCTCGCACTGGCG‑CCCGCCTG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGc < 2:2881932/76‑1 (MQ=255) tAATCTCGCACTGGCT‑GGCGGCTG‑CCCCCATTTGTCTTCACCCGTGGTGGCGTTTTATATCGCTACACCAcccccg > 2:5963388/1‑74 (MQ=255) aaTCTCGCACTGGCT‑GGCGCCCG‑CCGCCATTTGTCTTCACCCGGGGTGGCGGTTTATTTTGCTTCACCCCCCCacg > 2:5676855/1‑74 (MQ=255) ctcGCACTGGCT‑GGCGCCCG‑CCCCCAATCGTCTGCACGCGGGCTGGGGGTTTATATCGCTTCAACACACCCGCggg > 2:4203399/1‑76 (MQ=255) cccGCACTGCCG‑CCCGCCTG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTggg < 1:6305712/74‑1 (MQ=255) cTGGCT‑GCCGCCTG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGGGGGCGACGc > 2:4929909/1‑76 (MQ=255) ggCT‑GCCGCCTG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTCTATATCGCTACACCACGCCCGTGGGCGGAGCAt > 2:3716533/1‑76 (MQ=255) ggCT‑GCCGCCTG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCAt > 2:4542223/1‑76 (MQ=255) ct‑gccgcctg‑ccgcAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATaa > 1:1474768/1‑76 (MQ=255) ct‑gccgcctg‑ccgcAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATaa > 2:16773/1‑76 (MQ=255) t‑gccgcctg‑ccgcAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATaaa > 2:3007964/1‑75 (MQ=255) t‑gccgcctg‑ccgcAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATAAc > 2:4507328/1‑76 (MQ=255) t‑gccgcctg‑ccgcAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATAAc > 1:1758652/1‑76 (MQ=255) t‑gccgcctg‑ccgcAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATAAc > 2:5776236/1‑76 (MQ=255) t‑gccgcctg‑ccgcAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATAAc > 1:3891775/1‑76 (MQ=255) t‑gccccctg‑ccgcAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATAAc < 2:3617871/76‑1 (MQ=255) gccgcctg‑ccgcAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATAACa > 2:4650880/1‑76 (MQ=255) ccgcctg‑ccgcAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATAACAt > 2:3891556/1‑76 (MQ=255) | CAGGAGTTTTATGATTACCCATCTGGTCTGGTTTCGCC‑AGGATTTACGTCTGCACGATAATCTCGCACTGGCT‑GCCGCCTG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATAACAT > REL606/720390‑720539 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |