| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4419506 = | 213 (0.960) | 3 (0.020) | 3/134 | 18.3 | 1.4% | intergenic (+13/+110) | ytfH/cpdB | predicted transcriptional regulator/bifunctional 2',3'‑cyclic nucleotide 2'‑phosphodiesterase/3'‑nucleotidase periplasmic precursor protein |
| ? | REL606 | = 4621373 | 221 (1.120) | intergenic (+74/+11) | trpR/yjjX | Trp operon repressor/NTPase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 296 total aligned reads displayed.
GATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGA > REL606/4621298‑4621448 | gattTTGTAGGCCTGATAAGACGCGGCAGCGTCGCGTCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGc > 1:3557699/1‑76 (MQ=255)gattTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGc < 2:6165270/76‑1 (MQ=255)gattTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGGGGACGc > 2:2473374/1‑76 (MQ=255) tttGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGGGGCGTGAACGccct > 2:5640506/1‑74 (MQ=255) tttGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGGACGccct > 2:21229/1‑74 (MQ=255) tttGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGGACGCCtt > 1:5651176/1‑76 (MQ=255) ttGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTa < 2:1890081/76‑1 (MQ=255) ttGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTa < 2:6720083/76‑1 (MQ=255) ttGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTa < 2:6339613/76‑1 (MQ=255) ttGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGGGAACGCCTTa > 2:1044291/1‑76 (MQ=255) ttGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGGGAACGCCTTa > 2:119205/1‑76 (MQ=255) tGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTAt > 1:4539754/1‑76 (MQ=255) tGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAAAGCCTTAt > 2:5992697/1‑76 (MQ=255) tGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGGGAACGCCTTAt > 1:3306495/1‑76 (MQ=255) tAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTAttc > 1:6107963/1‑74 (MQ=255) tAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATcc > 1:5585609/1‑76 (MQ=255) tAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATcc > 2:1269381/1‑76 (MQ=255) tAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATcc > 1:6864120/1‑76 (MQ=255) tAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATcc < 1:843400/76‑1 (MQ=255) tAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATcc > 2:2339260/1‑76 (MQ=255) aGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGCATGCCGGATGCGGCGTGAACGCCTTATCCg > 2:3427563/1‑76 (MQ=255) aGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCg > 2:2973327/1‑76 (MQ=255) aGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCCTATCCg > 2:1987332/1‑76 (MQ=255) gCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTc > 1:40331/1‑76 (MQ=255) gCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTc > 1:4692243/1‑76 (MQ=255) gCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAAAGCCTTATCCGTc > 1:2128910/1‑76 (MQ=255) gCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGGGCAAGCCTTATTCGTc > 2:6257727/1‑76 (MQ=17) ccTGATAAGCCGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTcc < 2:6651561/76‑1 (MQ=255) ccTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATTCGTcc > 2:7169360/1‑76 (MQ=255) ccTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTcc > 2:4096962/1‑76 (MQ=255) cTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCt < 1:665049/76‑1 (MQ=255) tGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTa < 2:5968252/76‑1 (MQ=255) tGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTa > 2:49101/1‑76 (MQ=255) tGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGGGAACGCCTTATCCGGccca > 1:2709458/1‑74 (MQ=14) gATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTAc > 2:6469405/1‑76 (MQ=255) gATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTAc < 1:177754/76‑1 (MQ=255) gATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTAc > 2:631927/1‑76 (MQ=255) gATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCCGATGCGGCGTGTACGCCCTATCCGTCCTaa > 2:3869333/1‑75 (MQ=17) aTAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACa < 1:4913914/76‑1 (MQ=255) aTAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACa > 2:6086398/1‑76 (MQ=255) aTAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACa < 2:5836772/76‑1 (MQ=255) tAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTCCaa > 2:3138553/1‑76 (MQ=255) tAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACaa < 2:1326849/76‑1 (MQ=255) tAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACaa < 2:2433779/76‑1 (MQ=255) tAAGACGCGGCAGCGTCGCATCAGGCAACGTGCACCGAATGACGGATGCCGCGTCAACGCCTTATCCGGCCTACaa > 2:6982458/1‑76 (MQ=14) aaGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAt < 1:3594109/76‑1 (MQ=255) gACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACCATGc > 1:1354985/1‑76 (MQ=255) gACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGc < 2:3963588/76‑1 (MQ=255) ggCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGat > 1:988675/1‑76 (MQ=255) gCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGata < 1:635968/76‑1 (MQ=255) gCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGata < 2:1413981/76‑1 (MQ=255) cAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGatat < 1:2816164/76‑1 (MQ=255) cAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGatat < 2:282074/76‑1 (MQ=255) aGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGAtata > 2:4465894/1‑76 (MQ=255) aGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGAtata < 2:3746149/76‑1 (MQ=255) aGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGAtata > 1:5055273/1‑76 (MQ=255) cGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACg > 2:5543109/1‑76 (MQ=255) gTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACgg < 2:6857415/76‑1 (MQ=255) gCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCAt > 1:1184808/1‑76 (MQ=255) cATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCAtt < 2:4650638/76‑1 (MQ=255) cATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCAtt > 2:163416/1‑76 (MQ=255) tCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATtgt < 2:3104777/76‑1 (MQ=255) cAGGCATCGTGCACCGAATGCCGGATGCGGTGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATtgtg < 2:7092023/76‑1 (MQ=255) cAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATtgtg < 2:4273704/76‑1 (MQ=255) cAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATtgtg > 2:4726239/1‑76 (MQ=255) cAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATtgtg < 1:3520163/76‑1 (MQ=255) cAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATtgtg > 1:567812/1‑76 (MQ=255) cAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATtgtg > 2:3922073/1‑76 (MQ=255) ggCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGaa < 1:1286852/76‑1 (MQ=255) gCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGaaa < 2:4361230/76‑1 (MQ=255) cATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAAc > 2:4534281/1‑76 (MQ=255) aTCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACg < 2:178390/76‑1 (MQ=255) tCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACgg < 2:3352900/76‑1 (MQ=255) tCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACgg < 2:5182268/76‑1 (MQ=255) gTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGAc > 2:1575779/1‑76 (MQ=255) gTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGAc < 1:103009/76‑1 (MQ=255) gCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTc < 2:2701266/76‑1 (MQ=255) cACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCa > 2:823776/1‑76 (MQ=255) aCCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAg < 1:3802829/76‑1 (MQ=255) cGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAgcg < 2:494426/76‑1 (MQ=255) aaTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGcc < 1:1458382/76‑1 (MQ=255) aaTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGcc > 2:363572/1‑76 (MQ=255) aTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCa > 2:5033344/1‑76 (MQ=255) aTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCa < 2:326821/76‑1 (MQ=255) aTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCa > 2:2943029/1‑76 (MQ=255) cGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGAt > 2:4069993/1‑76 (MQ=255) ggATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATc > 1:2190895/1‑76 (MQ=255) ggATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATc > 1:5880240/1‑76 (MQ=255) gATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCa < 2:6942249/76‑1 (MQ=255) aTGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCAc > 2:5141819/1‑76 (MQ=255) ggcgTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGcc > 1:3220569/1‑76 (MQ=255) ggcgTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGcc < 2:5763474/76‑1 (MQ=255) gcgTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCt < 2:2239065/76‑1 (MQ=255) gTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCTCCGCCTgg > 1:3668854/1‑76 (MQ=255) aCGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGAt < 2:3464709/76‑1 (MQ=255) cGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATa < 2:481399/76‑1 (MQ=255) cGCCTTATCCGGCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATa < 1:5452772/76‑1 (MQ=255) cGCCTTAGCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATa < 2:1486734/76‑1 (MQ=255) ccTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGa > 1:3403872/1‑76 (MQ=255) ccTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGa > 2:2756332/1‑76 (MQ=255) | GATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGA > REL606/4621298‑4621448 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |