| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 2,333,651 | G→A | S400F (TCT→TTT) | nuoN ← | NADH dehydrogenase subunit N |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 2,333,651 | 0 | G | A | 99.5% | 766.3 / NA | 187 | S400F (TCT→TTT) | nuoN | NADH dehydrogenase subunit N |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (76/110); minor base C (1/0); total (77/110) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.12e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 202 total aligned reads displayed.
CAGCGGCATTGCCAAACGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAGAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGACCCGGTTGTTCCGGGG > REL606/2333578‑2333723 | cAGCGGCATTGCCAAACGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCGCCAGTACCAACAGTGCaaaa < 1:6218261/76‑1 (MQ=255)cAGCGGCATTGCCAAACGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCaaaa > 1:3860457/1‑76 (MQ=255)cAGCGGCATTGCCAAACGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCaaaa > 1:4501961/1‑76 (MQ=255)cAGCGGCATTGCCAAACGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCaaaa > 1:2119359/1‑76 (MQ=255) aGCGGCATTGCCAAACGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAaaaa > 1:3401939/1‑76 (MQ=255) cGGCATTGCCAAACGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATc > 2:76985/1‑76 (MQ=255) cGGCATTGCCAAACGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATc > 2:7111910/1‑76 (MQ=255) ggCATTGCCAAACGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCa < 2:4647003/76‑1 (MQ=255) aTTGCCAAACGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGca > 2:2251905/1‑76 (MQ=255) aTTGCCAAACGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGca > 2:1966418/1‑76 (MQ=255) aTTGCCAAACGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGca > 2:3514546/1‑76 (MQ=255) aTTGCCAAACGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGca > 2:3814079/1‑76 (MQ=255) ttaccAAACGCACAAAACTAATCAGAGGTTGTCGCCAAACACCCAGGACCAGTACCAACAGTGCAAAAATCTGcac > 2:3488618/4‑76 (MQ=255) tGCCAAACGCACAATACTAATCAGCGGTTGTGGCCATAGACCCAGCACCAGTACCAACAGTGCAAAACTCAGcacc > 1:5015834/1‑76 (MQ=255) tGCCAAACGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGcacc > 1:755338/1‑76 (MQ=255) tGCCAAACGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGcacc < 1:3017334/76‑1 (MQ=255) gCCAAACGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGcacca < 1:1075669/76‑1 (MQ=255) cAAACGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACg < 2:3137468/76‑1 (MQ=255) cAAACGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACg < 1:965600/76‑1 (MQ=255) aaCGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGAt < 1:5971639/76‑1 (MQ=255) aCGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATa < 2:6302099/76‑1 (MQ=255) cacaATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATAccg > 1:5723387/1‑76 (MQ=255) cacaATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATAccg > 1:4183914/1‑76 (MQ=255) cacaATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATAccg > 2:6285679/1‑76 (MQ=255) cacaATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATAccg > 1:2185802/1‑76 (MQ=255) acaATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATAccgc > 2:3909723/1‑76 (MQ=255) aaTACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATAccgccc > 1:5463660/1‑76 (MQ=255) aaTACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATAccgccc < 1:6042178/76‑1 (MQ=255) aTACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATAccgcccg < 2:7196928/76‑1 (MQ=255) aTACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATAccgcccg < 1:4609610/76‑1 (MQ=255) tACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATAccgcccgc > 1:2934681/1‑76 (MQ=255) aCTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCcgcg < 2:5487241/76‑1 (MQ=255) aCTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCcgcg < 1:5178635/76‑1 (MQ=255) cTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCgcgc > 2:5150326/1‑76 (MQ=255) tAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCt < 1:5834160/76‑1 (MQ=255) aaTCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTg < 2:6744051/76‑1 (MQ=255) tCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTa > 1:3423544/1‑76 (MQ=255) tCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTa > 2:2428612/1‑76 (MQ=255) tCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTa > 2:4275201/1‑76 (MQ=255) cAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTAc < 1:973508/76‑1 (MQ=255) gCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTg < 2:3204974/76‑1 (MQ=255) gCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTg < 1:44778/76‑1 (MQ=255) gCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTg < 1:2427454/76‑1 (MQ=255) cGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGc > 1:1835385/1‑76 (MQ=255) cGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGc < 1:1516999/76‑1 (MQ=255) cGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGc > 1:7103837/1‑76 (MQ=255) cGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGGACTGc > 2:6031971/1‑76 (MQ=255) ggTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGcc < 2:2699206/76‑1 (MQ=255) ggTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGcc < 2:5362170/76‑1 (MQ=255) ggTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGcc < 2:1853023/76‑1 (MQ=255) gTTGTGGCCATACACCCAGCACCAGTACCACCAGTGCACAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCa > 2:3576558/1‑76 (MQ=255) gTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCa < 1:3331781/76‑1 (MQ=255) gTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCa < 1:446097/76‑1 (MQ=255) gTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCa < 2:460418/76‑1 (MQ=255) tgtgGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGt > 1:3485329/1‑76 (MQ=255) gtgGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGtt > 1:3165004/1‑76 (MQ=255) tgGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGttt > 1:5625474/1‑76 (MQ=255) tgGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGttt < 2:6628476/76‑1 (MQ=255) tgGCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGttt < 2:3091847/76‑1 (MQ=255) ggCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTg < 1:3701936/76‑1 (MQ=255) ggCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTg < 1:6306034/76‑1 (MQ=255) ggCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTg > 1:147506/1‑76 (MQ=255) ggCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTg < 1:4986430/76‑1 (MQ=255) ggCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTg < 2:2795312/76‑1 (MQ=255) ggCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTg < 1:1655835/76‑1 (MQ=255) gCCATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGa < 1:186869/76‑1 (MQ=255) cATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATg < 2:4633787/76‑1 (MQ=255) cATACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATg < 2:5903314/76‑1 (MQ=255) aTACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATgg < 1:4025476/76‑1 (MQ=255) aTACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATgg < 1:7124169/76‑1 (MQ=255) aTACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATgg < 1:2759321/76‑1 (MQ=255) tACACCCAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGt < 1:1048036/76‑1 (MQ=255) cccAGCACCAGTACCAACAGTGCAAAGATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCAt > 1:4769928/1‑76 (MQ=255) cccAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCAt > 2:2262741/1‑76 (MQ=255) cAGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATcg < 2:5703007/76‑1 (MQ=255) aGCACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCAgcgc > 1:5418243/1‑76 (MQ=255) cACCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGa > 1:3655441/1‑76 (MQ=255) aCCAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGAc < 1:4142781/76‑1 (MQ=255) ccAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGccc > 2:1986833/1‑76 (MQ=255) ccAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGAcc < 2:4357836/76‑1 (MQ=255) ccAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGAcc > 2:6901206/1‑76 (MQ=255) cAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGAccc < 2:3008249/76‑1 (MQ=255) cAGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGAccc < 1:1197656/76‑1 (MQ=255) aGTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGACCCg < 1:605157/76‑1 (MQ=255) gTACCAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGACCCgg < 1:4700365/76‑1 (MQ=255) ccAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGACCCGgttg > 2:2193372/1‑76 (MQ=255) ccAACAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGACCCGgttg > 1:2216473/1‑76 (MQ=255) aCAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGACCCGGTTGTTc < 2:126578/76‑1 (MQ=255) aCAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGACCCGGTTGTTc < 1:6523323/76‑1 (MQ=255) aCAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGACCCGGTTGTTc < 1:4287358/76‑1 (MQ=255) cAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGACCCGGTTGTTcc < 2:574194/76‑1 (MQ=255) cAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGACCCGGTTGTTcc > 1:3755201/1‑76 (MQ=255) cAGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGACCCGGTTGTTcc < 1:3925474/76‑1 (MQ=255) aGTGCAAAAATCAGCCCCACGATACCGCCCGCGCTGTACTGCCAGTTTGGTGGTGCATCGCGACCCGGTTGTTCCg < 1:5700393/76‑1 (MQ=255) aGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGACCCGGTTGTTCCg < 1:1710103/76‑1 (MQ=255) aGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGACCCGGTTGTTCCg < 1:4398280/76‑1 (MQ=255) aGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGACCCGGTTGTTCCg < 2:1463283/76‑1 (MQ=255) aGTGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGACCCGGTTGTTCCg > 2:4724444/1‑76 (MQ=255) tGCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGACCCGGTTGTTCCggg < 2:7047029/76‑1 (MQ=255) gCAAAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGACCCGGTTGTTCCgggg < 2:5959903/76‑1 (MQ=255) | CAGCGGCATTGCCAAACGCACAATACTAATCAGCGGTTGTGGCCATACACCCAGCACCAGTACCAACAGTGCAGAAATCAGCACCACGATACCGCCCGCGCTGTACTGCCAGTTTGATGGTGCATCGCGACCCGGTTGTTCCGGGG > REL606/2333578‑2333723 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |