| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2042218 = | 144 (0.450) | 8 (0.030) | 6/134 | 19.5 | 5.6% | coding (603/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | 2042455 = | 141 (0.500) | coding (366/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCCAATCGTTATCCTATAGTGTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTTTGCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2042300‑2042218‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgctatAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAA > REL606/2042455‑2042529 TCCAATCGTTATCCTATAGTGTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATT < 1:1128669/76‑1TCCAATCGTTATCCTATAGTGTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATT > 2:10030722/1‑76TCCAATCGTTATCCTATAGTGTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATT > 1:7601072/1‑76 CCAATCGTTATCCTATAGTGTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTT < 2:9103363/76‑1 CCAATCGTTATCCTATAGTGTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTT < 1:1680635/76‑1 CCAATCGTTATCCTATAGTGTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTT < 1:9257613/76‑1 CCAATCGTTATCCTATAGTGTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTT > 1:6356781/1‑76 CAATCGTTATCCTATAGTGTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTTT < 2:2580681/76‑1 CAATCGTTATCCTATAGTGTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTTT > 2:10097887/1‑76 ATCGTTATCCTATAGTGTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTTTGC < 1:7401488/76‑1 TCGTTATCCTATAGTGTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTTTGCT < 2:5809526/76‑1 CGTTATCCTATAGTGTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTTTGCTA < 2:4544517/76‑1 CGTTATCCTATAGTGTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTTTGCTA > 1:3138403/1‑76 GTTATCCTATAGTGTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTTTGCTAT < 1:2983853/76‑1 GTTATCCTATAGTGTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTTTGCTAT > 1:389910/1‑76 CCTATAGTGTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTTTGCTATAACTG < 2:981838/76‑1 GTGTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTTTGCTATAACTGTTAATG < 2:1790356/76‑1 GTGTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTTTGCTATAACTGTTAATG < 2:7958771/76‑1 GTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTTTGCTATAACTGTTAATGCT < 2:753755/76‑1 AAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTTTGCTATAACTGTTAATGCTAAAAT < 2:4374163/76‑1 CTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGAT < 2:1097534/76‑1 CTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGAT < 2:10190652/76‑1 ATATTTATAATCCATGGTATCCAAAAGAGAAATTTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCA < 2:7295884/76‑1 TTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAG > 1:6353061/1‑76 TTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAG < 1:3723112/76‑1 TTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAG < 1:7871430/76‑1 TTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGA > 2:7119141/1‑76 TTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGA > 1:9478983/1‑76 TTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGA < 1:9476693/76‑1 TTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGA < 1:8405567/76‑1 TGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAA < 2:6453800/76‑1 TGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAA < 2:1128669/76‑1 GCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAG > 1:9419851/1‑76 GCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAG < 1:4674078/76‑1 GCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAG < 2:7849173/76‑1 CTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGA > 1:3793352/1‑76 CTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGA < 1:1142410/76‑1 CTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGA > 1:5269065/1‑76 CTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGA < 1:5502262/76‑1 TATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGAT < 1:10151986/76‑1 TATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGAT < 2:6188883/76‑1 TATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGAT > 2:3212993/1‑76 TATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGAT < 1:4150123/76‑1 TATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGAT > 1:8988078/1‑76 TATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGAT < 1:6556849/76‑1 ATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATA > 2:5563343/1‑76 ATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATA < 1:1295198/76‑1 ATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATA > 1:1821478/1‑76 ATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATA < 1:6465220/76‑1 TAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAA < 1:1428937/76‑1 TAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAA < 1:7608301/76‑1 TAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAA < 1:4254806/76‑1 TAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAA < 1:688157/76‑1 TAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAA < 2:9038062/76‑1 TAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAA < 1:5660661/76‑1 TCCAATCGTTATCCTATAGTGTCATAAATTGTATTGTACTGAATATTTATAATCCATGGTATCCAAAAGAGAAATTTTGCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2042300‑2042218‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgctatAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAA > REL606/2042455‑2042529 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |