| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2040188 = | 80 (0.250) | 10 (0.030) | 10/138 | 17.4 | 10.6% | intergenic (‑60/+83) | vioB/vioA | VioB, involved in dTDP‑N‑acetylviosamine synthesis/VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040424 = | 95 (0.330) | coding (960/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 104 total aligned reads displayed.
GACTTTATCAGCAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGA > REL606/2040349‑2040499 | gccTTTATCAGCAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCata < 1:4559139/74‑1 (MQ=255)gACTTTATCAGCAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCata < 1:10115727/76‑1 (MQ=255)gACTTTATCAGCAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCata < 2:9590634/76‑1 (MQ=255)gACTTTATCAGCAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCata < 1:3626948/76‑1 (MQ=255) cTTTATCAGCAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATAtt > 1:8174620/1‑76 (MQ=255) tttATCAGCAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTa < 1:8920985/76‑1 (MQ=255) tATCAGCAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACt < 1:6976195/76‑1 (MQ=255) aTCAGCAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTg < 2:40700/76‑1 (MQ=255) tCAGCAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGa > 1:417610/1‑76 (MQ=255) aGCAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGAtt < 2:7745996/76‑1 (MQ=255) aGCAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGAtt < 1:6391431/76‑1 (MQ=255) aGCAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGAtt > 1:6006844/1‑76 (MQ=255) aGCAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGACATATTACTGAtt < 1:2924817/76‑1 (MQ=255) gCAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTa < 2:8239353/76‑1 (MQ=255) gCAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTa < 1:7230521/76‑1 (MQ=255) gCAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTa > 2:3967178/1‑76 (MQ=255) gCAAAACTATTGCAAAGTGGTAGATTATCAGCGCTAGCTGAAAGCAATCCTCGATACATAGGCATATTACTGATTa < 1:5899725/76‑1 (MQ=255) cAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTaa > 2:5988545/1‑76 (MQ=255) cAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTaa < 1:9454264/76‑1 (MQ=255) cAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTaa < 1:2597771/76‑1 (MQ=255) aaCACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAAt > 1:9781035/1‑76 (MQ=255) aaCACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTAATGATTAAt > 1:443958/1‑76 (MQ=255) acacTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATg < 1:3535192/76‑1 (MQ=255) acacTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATg < 1:7090819/76‑1 (MQ=255) acacTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATg < 2:2148228/76‑1 (MQ=255) acacTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATg < 2:2405307/76‑1 (MQ=255) cacTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATgg < 1:5697098/76‑1 (MQ=255) cacTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATgg < 1:8340534/76‑1 (MQ=255) cacTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATgg > 2:667932/1‑76 (MQ=255) cacTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATgg < 1:6302510/76‑1 (MQ=255) cacTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATgg > 2:2472642/1‑76 (MQ=255) cacTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATgg < 1:2897507/76‑1 (MQ=255) ctattggctattggTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGAt > 2:2332364/1‑76 (MQ=255) ctattggctattggTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGAt < 1:7553315/76‑1 (MQ=255) ctattggctattggTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGAt < 2:4964186/76‑1 (MQ=255) attggctattggTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATaa < 2:9404182/76‑1 (MQ=255) attggctattggTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATaa > 2:9850282/1‑76 (MQ=255) attggctattggTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATaa < 1:2558902/76‑1 (MQ=255) attggctattggTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATaa < 1:4209240/76‑1 (MQ=255) attggctattggTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATaa < 2:5936024/76‑1 (MQ=255) tggctattggTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATaaaa < 1:1787642/76‑1 (MQ=255) tggctattggTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATaaaa < 1:2781230/76‑1 (MQ=255) ggctattggTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATaaaaa < 1:2472642/76‑1 (MQ=255) ctattggTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATa > 2:1194283/1‑76 (MQ=255) ctattggTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATa < 2:1332779/76‑1 (MQ=255) ctattggTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATa < 2:288715/76‑1 (MQ=255) ctattggTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATa > 2:5998932/1‑76 (MQ=255) tattggTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATAc > 2:6532023/1‑76 (MQ=255) tattggTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATAc > 1:1032375/1‑76 (MQ=255) tggTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACttt > 1:5077465/1‑76 (MQ=255) ggTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTc < 1:5889534/76‑1 (MQ=255) gTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCg < 1:254091/76‑1 (MQ=255) tAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCga > 2:6418688/1‑76 (MQ=255) aGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCgag < 1:3903767/76‑1 (MQ=255) gATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCgaga < 2:8673270/76‑1 (MQ=255) ttATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATa < 1:8986928/76‑1 (MQ=255) tATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAg < 1:4388639/76‑1 (MQ=255) aTCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAgg < 1:7906031/76‑1 (MQ=255) aTCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAgg < 1:5538921/76‑1 (MQ=255) aTCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAgg < 1:666316/76‑1 (MQ=255) aTCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAgg < 1:9947844/76‑1 (MQ=255) aTCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAgg < 1:6745869/76‑1 (MQ=255) cAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGat < 1:5527236/76‑1 (MQ=255) cAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGat < 1:77942/76‑1 (MQ=255) cGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATGCTTTCGAGATAGGAtatt > 1:3703330/1‑76 (MQ=255) cGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGAtatt < 2:8165504/76‑1 (MQ=255) gCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGAtatta < 1:5415199/76‑1 (MQ=255) cTAGCTGAAATCAATCCTCGATACATAGGCATGTTACTGATTAATGGATAAAAATACTTTCGAGATAGGAtattat > 1:6690960/1‑76 (MQ=255) cTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGAtattat < 1:1998788/76‑1 (MQ=255) tAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATattatt < 2:7763337/76‑1 (MQ=255) tAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATattatt < 2:7165269/76‑1 (MQ=255) aGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTAttt < 1:761519/76‑1 (MQ=255) gCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTAtttt < 1:9096062/76‑1 (MQ=255) gCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTAtttt > 1:3903625/1‑76 (MQ=255) gAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCt > 2:1390703/1‑76 (MQ=255) gAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCt > 2:8805643/1‑76 (MQ=255) gAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCt < 1:9421315/76‑1 (MQ=255) taatcaatcCTCGATACATAGGCATATTACTGATTAATGGATAAAAATTCTTTCGAGATAGGATATTATTTTTCtt < 2:7046609/75‑1 (MQ=255) aaaTCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCtt < 1:2672278/76‑1 (MQ=255) atcaatcCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTaa < 1:2541987/76‑1 (MQ=255) atcaatcCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTaa < 2:5054143/76‑1 (MQ=255) tcaatcCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAg < 1:105906/76‑1 (MQ=255) atcCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTaa < 1:6282268/76‑1 (MQ=255) cGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCat < 1:3387447/76‑1 (MQ=255) aTACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCatat < 2:9367923/76‑1 (MQ=255) tACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATg < 2:4349439/76‑1 (MQ=255) tACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATg > 1:1439709/1‑76 (MQ=255) tACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATg < 1:8160029/76‑1 (MQ=255) tACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATg < 2:8173149/76‑1 (MQ=255) cATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGcc > 1:4721202/1‑76 (MQ=255) aTAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCt > 2:8044592/1‑76 (MQ=255) aGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGa > 2:543070/1‑76 (MQ=255) aGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGa > 1:1277819/1‑76 (MQ=255) aGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGa > 1:7278946/1‑76 (MQ=255) ggCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGAt < 2:8914431/76‑1 (MQ=255) cATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCa < 1:8805643/76‑1 (MQ=255) cATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCa < 1:7323378/76‑1 (MQ=255) cATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCa > 1:9419140/1‑76 (MQ=255) atatTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCAc > 1:9032190/1‑76 (MQ=255) atTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGa < 1:8287631/76‑1 (MQ=255) | GACTTTATCAGCAACACTATTGGCTATTGGTAGATTATCAACGCTAGCTGAAATCAATCCTCGATACATAGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACGA > REL606/2040349‑2040499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |