New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	2041220 =	105 (0.330)	6 (0.020)	6/142	20.0	7.3%	coding (164/1113 nt)	vioA	VioA, involved in dTDP‑N‑acetylviosamine synthesis
	?	REL606	2041465 =	54 (0.180)					coding (1356/1428 nt)	wzx	O antigen translocase (Wzx)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGA  >  REL606/2041390‑2041539                                                                            |                                                                           tCCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGtatata                                                                            >  1:307668/1‑76 (MQ=255) tCCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGtatata                                                                            <  2:4102180/76‑1 (MQ=255) tCCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGtatata                                                                            <  1:6117369/76‑1 (MQ=255) tCCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGtatata                                                                            <  1:5712964/76‑1 (MQ=255)   cTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAAt                                                                          <  1:7135262/76‑1 (MQ=255)   cTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAAt                                                                          <  2:634122/76‑1 (MQ=255)    ttATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATg                                                                         <  1:8321698/76‑1 (MQ=255)    ttATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATg                                                                         <  2:7732407/76‑1 (MQ=255)    ttATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATg                                                                         <  1:8659802/76‑1 (MQ=255)      aTTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGc                                                                       <  1:4261698/76‑1 (MQ=255)      aTTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGc                                                                       <  1:4345520/76‑1 (MQ=255)       tttttttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCa                                                                      <  1:6528068/76‑1 (MQ=255)       tttttttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCa                                                                      <  1:605304/76‑1 (MQ=255)           tttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTta                                                                  <  1:5458085/76‑1 (MQ=255)           tttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTta                                                                  <  1:6012180/76‑1 (MQ=255)           tttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTta                                                                  <  1:9743825/76‑1 (MQ=255)           tttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTta                                                                  <  2:5660595/76‑1 (MQ=255)            ttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTtaa                                                                 <  2:7338304/76‑1 (MQ=255)             tataAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTtaat                                                                >  2:1332/1‑76 (MQ=255)              ataAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTtaata                                                               >  2:2446170/1‑76 (MQ=255)               taAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTtaataa                                                              >  1:6653449/1‑76 (MQ=255)                aaGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATaaa                                                             <  1:2971909/76‑1 (MQ=255)                 agagAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATaaaa                                                            <  1:6442291/76‑1 (MQ=255)                 agagAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATaaaa                                                            <  1:1555033/76‑1 (MQ=255)                      aataatAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTa                                                       <  1:9730834/76‑1 (MQ=255)                       ataataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTaa                                                      >  1:8927089/1‑76 (MQ=255)                       ataataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTaa                                                      >  1:7728246/1‑76 (MQ=255)                       ataataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTaa                                                      <  1:5778522/76‑1 (MQ=255)                        taataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTaaa                                                     <  1:7825522/76‑1 (MQ=255)                         aataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAat                                                    <  1:8065980/76‑1 (MQ=255)                         aataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAat                                                    <  1:8950103/76‑1 (MQ=255)                          ataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAata                                                   <  1:2257952/76‑1 (MQ=255)                          ataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGA‑GTATATAATGGCATTTAATAAAATAGTAAatat                                                  <  1:5535232/76‑1 (MQ=255)                           taGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatat                                                  <  1:8652927/76‑1 (MQ=255)                            aGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatatt                                                 <  1:7686578/76‑1 (MQ=255)                             gTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatatta                                                <  1:1484059/76‑1 (MQ=255)                               cATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatattata                                              <  2:9405814/76‑1 (MQ=255)                                aTAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatattatat                                             <  1:3109129/76‑1 (MQ=255)                                 tAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatattatatt                                            >  1:8615229/1‑76 (MQ=255)                                  aaaTATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATAttt                                           <  2:9782879/76‑1 (MQ=255)                                    atatTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTtaa                                         <  1:5769400/76‑1 (MQ=255)                                    atatTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTtaa                                         <  1:1792829/76‑1 (MQ=255)                                     tatTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTtaat                                        <  1:7167069/76‑1 (MQ=255)                                      atTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTtaata                                       >  2:2749161/1‑76 (MQ=255)                                      atTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTtaata                                       <  1:310077/76‑1 (MQ=255)                                              gTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTcc                               >  1:9997017/1‑76 (MQ=255)                                               tACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCa                              >  2:6896681/1‑76 (MQ=255)                                                 cATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATa                            <  2:6693634/76‑1 (MQ=255)                                                    aaTTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACtt                         >  2:6765480/1‑76 (MQ=255)                                                         gAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTc                    <  1:6563527/76‑1 (MQ=255)                                                              aGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTta               >  1:3179705/1‑76 (MQ=255)                                                               gtgtGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTtat              <  1:1711537/76‑1 (MQ=255)                                                                tgtgATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTtata             >  1:4239334/1‑76 (MQ=255)                                                                       tatataATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGt      >  2:10037149/1‑76 (MQ=255)                                                                         tataATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTa    <  2:5361512/76‑1 (MQ=255)                                                                          ataATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAg   >  2:8060339/1‑76 (MQ=255)                                                                           taATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGa  >  1:9674739/1‑76 (MQ=255)                                                                            |                                                                           TCCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGA  >  REL606/2041390‑2041539

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.