| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2417500 = | 240 (0.760) | 7 (0.020) | 6/142 | 20.0 | 2.7% | coding (67/1164 nt) | emrK | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component |
| ? | REL606 | 2417755 = | 274 (0.910) | intergenic (‑189/‑227) | emrK/evgA | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component/DNA‑binding response regulator in two‑component regulatory system with EvgS | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 288 total aligned reads displayed.
CTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGATTTTATTGTTGACATT > REL606/2417679‑2417830 | tAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAgg < 1:10077694/76‑1 (MQ=255) tAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAgg < 2:7069827/76‑1 (MQ=255) tAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAgg < 1:8334668/76‑1 (MQ=255) aaTTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGa > 2:7269579/1‑76 (MQ=255) tttAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGAtt < 2:5044843/76‑1 (MQ=255) ttAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTa > 2:767161/1‑76 (MQ=255) ttAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTa < 2:5443832/76‑1 (MQ=255) tAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAg < 1:9256850/76‑1 (MQ=255) aaaTGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGt < 1:7881494/76‑1 (MQ=255) aaaTGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGt > 1:1754103/1‑76 (MQ=255) aaaTGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGt < 2:10175476/76‑1 (MQ=255) aaaTGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGt > 1:627095/1‑76 (MQ=255) aaaTGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGt < 2:9451796/76‑1 (MQ=255) aaaTGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGt > 1:9590036/1‑76 (MQ=255) aaaTGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGt < 1:9448284/76‑1 (MQ=255) aaTGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTa > 1:1874190/1‑76 (MQ=255) aaTGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTa < 1:7184939/76‑1 (MQ=255) aaTGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTa > 2:6149810/1‑76 (MQ=255) gAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTaaga < 1:4656918/76‑1 (MQ=255) gAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTaaga < 1:1407951/76‑1 (MQ=255) aGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTaagaa < 1:6907311/76‑1 (MQ=255) gCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACt > 2:5707512/1‑76 (MQ=255) cAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACtt < 2:1526462/76‑1 (MQ=255) cAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACtt > 2:446006/1‑76 (MQ=255) cAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACtt < 2:4099628/76‑1 (MQ=255) aaaaaaaaCAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTta < 1:2118906/76‑1 (MQ=255) aaaaaaaCAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTtat < 1:5960434/76‑1 (MQ=255) aaaaaaCAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTtata < 1:4082584/76‑1 (MQ=255) aaaaaaCAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTtata < 2:8098932/76‑1 (MQ=255) aaaaaaCAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTtata < 1:3143087/76‑1 (MQ=255) aaaaaCAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAg > 2:3407138/1‑76 (MQ=255) aaaaCAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGt < 2:4744922/76‑1 (MQ=255) aaaCAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTg < 1:8847324/76‑1 (MQ=255) aaaCAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTg < 2:9073776/76‑1 (MQ=255) aacaacAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGc > 2:3278578/1‑76 (MQ=255) aacaacAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGc < 1:2823826/76‑1 (MQ=255) caacaGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCa < 2:6528518/76‑1 (MQ=255) caacaGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCa > 2:6856330/1‑76 (MQ=255) acaGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAAc < 1:5528968/76‑1 (MQ=255) caGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACt > 1:2431514/1‑76 (MQ=255) agagGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACtt < 1:7520169/76‑1 (MQ=255) gagGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTg < 1:4213973/76‑1 (MQ=255) agGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGa < 1:2988916/76‑1 (MQ=255) ggACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGaa < 1:844897/76‑1 (MQ=255) ggACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGaa < 2:1401385/76‑1 (MQ=255) aCTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAAc < 1:3408747/76‑1 (MQ=255) ccaaaCCGTGGCATTTGCAATACACTTCTTACGACTGTAGGATTAGTAAGAAGACTTATAGGGCCAACTTGAAACt < 2:7551351/74‑1 (MQ=255) cTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACt < 1:6003183/76‑1 (MQ=255) tAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACta < 2:2490646/76‑1 (MQ=255) tAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACta < 2:3035723/76‑1 (MQ=255) tAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACta > 2:1928810/1‑76 (MQ=255) tAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACta > 2:7485608/1‑76 (MQ=255) aaaCCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACtat > 2:828139/1‑76 (MQ=255) aaaCCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACtat > 2:8401481/1‑76 (MQ=255) aaaCCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACtat < 1:7114948/76‑1 (MQ=255) aaaCCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACtat > 2:2102060/1‑76 (MQ=255) aaaCCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACtat > 1:7742715/1‑76 (MQ=255) aaCCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACtata < 2:3943913/76‑1 (MQ=255) aaCCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACtata < 1:6091153/76‑1 (MQ=255) aaCCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACtata < 2:2777298/76‑1 (MQ=255) aCCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATaa < 2:801339/76‑1 (MQ=255) ggCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAatcat > 1:977877/1‑76 (MQ=255) ggCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAatcat > 2:4214876/1‑76 (MQ=255) cTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCg < 1:414190/76‑1 (MQ=255) cTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCg < 2:8575445/76‑1 (MQ=255) ttttGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCgg < 1:6246786/76‑1 (MQ=255) ttttGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCgg > 1:9639675/1‑76 (MQ=255) tGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTAc > 2:7337539/1‑76 (MQ=255) tGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTAc > 1:861276/1‑76 (MQ=255) gCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACa > 1:1528796/1‑76 (MQ=255) cAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCTAACTTGAAACTATAAATCATCGGTACaa < 2:5198301/76‑1 (MQ=255) cAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACaa > 2:10090815/1‑76 (MQ=255) aTACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATc < 2:3832595/76‑1 (MQ=255) aTACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATc > 2:8945769/1‑76 (MQ=255) tACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATcc > 1:3922847/1‑76 (MQ=255) aaTTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTg < 2:2180950/76‑1 (MQ=255) aaTTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTg < 1:5257955/76‑1 (MQ=255) aaTTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTg < 2:8641244/76‑1 (MQ=255) aaTTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTg > 2:2072229/1‑76 (MQ=255) aaTTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTg < 2:2345072/76‑1 (MQ=255) aTTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGa > 1:4853125/1‑76 (MQ=255) aTTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGa > 1:2667783/1‑76 (MQ=255) ttCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGAt < 1:7405672/76‑1 (MQ=255) ttCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGAt > 1:7605898/1‑76 (MQ=255) cTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGAttt > 2:3558740/1‑76 (MQ=255) cTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGAttt < 2:3521252/76‑1 (MQ=255) cTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGAttt > 1:4477637/1‑76 (MQ=255) ttACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGAtttt < 1:804787/76‑1 (MQ=255) ttACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGAtttt > 1:9753084/1‑76 (MQ=255) tACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGATTTTa > 2:9870420/1‑76 (MQ=255) gCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGATTTTAttg < 1:5402720/76‑1 (MQ=255) cTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGATTTTAttgtt > 2:82251/1‑76 (MQ=255) cTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGATTTTAttgtt > 1:1144480/1‑76 (MQ=255) cTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGATTTTAttgtt > 1:10206884/1‑76 (MQ=255) tGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGATTTTAttgttg > 1:9374767/1‑76 (MQ=255) tGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGATTTTAttgttg < 1:1969459/76‑1 (MQ=255) tAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGATTTTATTGTTGAc < 2:6359961/76‑1 (MQ=255) tAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGATTTTATTGTTGAc > 1:5679137/1‑76 (MQ=255) aGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGATTTTATTGTTGAca > 2:7824940/1‑76 (MQ=255) ggATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGATTTTATTGTTGAcat > 1:5022663/1‑76 (MQ=255) | CTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATCATCGGTACAATCCCTGATTTTATTGTTGACATT > REL606/2417679‑2417830 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |