| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,875,625 | 1 | . | T | 90.9% | 111.9 / 5.5 | 33 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base T (13/17); total (15/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.08e-01 | |||||||||||
TAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑T‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875551‑3875695 | tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCATCTTGAAAAAACTACA‑t > 2:1241035/1‑76 (MQ=255) aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑t > 2:1290029/1‑76 (MQ=255) ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑tt‑ttt > 1:323279/1‑76 (MQ=255) ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑tt‑ttt < 1:846543/76‑1 (MQ=255) ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑tt‑ttt > 1:774030/1‑76 (MQ=255) tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑tt‑tttttca < 1:538983/76‑4 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTg > 2:173655/1‑76 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTg > 2:173644/1‑76 (MQ=255) tACGCGTCCTGACTGTANTTTGAGAACGAATTTAAACCGCTTCACCTTGAAACAACTACA‑T‑TTCTTATCATCGTGa > 1:187940/1‑76 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGaa > 1:926219/1‑76 (MQ=255) cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGaaa < 1:868791/76‑1 (MQ=255) tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGa < 1:1031018/76‑1 (MQ=255) aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACagag > 2:522924/1‑76 (MQ=255) gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGAt > 2:189132/1‑76 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATaa > 2:1251956/1‑76 (MQ=255) aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATaaa < 1:708871/76‑1 (MQ=255) ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAAtt < 1:1177676/76‑1 (MQ=255) gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGt > 2:1135209/1‑76 (MQ=255) gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGt < 2:541824/76‑1 (MQ=255) gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑T‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGtt > 2:682897/1‑76 (MQ=255) gaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTc > 2:835637/1‑76 (MQ=255) aTTTAAACCGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc < 2:774028/76‑1 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg > 1:270385/1‑76 (MQ=255) tAAACCGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACCGAGGATAAANTGTTCAATAACGGa < 1:3872/76‑1 (MQ=255) tAAACCGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa < 2:637433/76‑1 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 2:380423/1‑76 (MQ=255) aCCGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa < 1:488394/76‑1 (MQ=255) aCCGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa < 1:603638/76‑1 (MQ=255) ccGCTTCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt < 1:937533/76‑1 (MQ=255) ttCACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc < 1:1111533/76‑1 (MQ=255) cACCTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGc > 1:779635/1‑76 (MQ=255) ccTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg < 2:926217/76‑1 (MQ=255) cTTGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa < 1:343058/76‑1 (MQ=255) ttGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc > 2:142563/1‑76 (MQ=255) ttGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc > 2:781851/1‑76 (MQ=255) tGAAAAAACTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg < 2:1394746/76‑1 (MQ=255) tGAAAAAACTACA‑TGTC‑TTTTCATCGTGAACTGGACAGATGATAAATTGTTCAATAACGGATTATCCCCGCTGACg < 1:25338/76‑1 (MQ=255) cTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc < 2:569487/76‑1 (MQ=255) cTACATT‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc < 2:1367913/76‑1 (MQ=255) | TAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑T‑TT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875551‑3875695 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |