| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 2,889,584 | 0 | C | A | 37.4% | 155.9 / 82.6 | 91 | T114N (ACC→AAC) | xdhC | xanthine dehydrogenase, Fe‑S binding subunit |
| Reads supporting (aligned to +/- strand): ref base C (15/42); new base A (34/0); total (49/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.41e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.49e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 175 total aligned reads displayed.
CTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAG‑CCATTAA‑CCATTACGGAAATTCGTCGCGGACTGGCGGGAAATC > REL606/2889509‑2889658 | cATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCa < 1:2201228/76‑1 (MQ=255) cATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCa < 1:1968239/76‑1 (MQ=255) cATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACa > 1:3133285/1‑76 (MQ=255) aTGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAcacc > 1:1110000/1‑73 (MQ=255) aTGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAacac > 1:5280681/1‑76 (MQ=255) aTGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCAc < 1:5631773/76‑1 (MQ=255) aTGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCAc < 2:5943563/76‑1 (MQ=255) aTGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCAc < 2:6334853/76‑1 (MQ=255) aTGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACAAc > 1:5203479/1‑76 (MQ=255) tGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAacacc > 2:2592416/1‑75 (MQ=255) tGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACACg > 1:7706946/1‑76 (MQ=255) gTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAacacag > 1:2869390/1‑74 (MQ=255) gTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACACgg > 1:803335/1‑76 (MQ=255) gTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACACgg > 1:4522472/1‑76 (MQ=255) cagcagGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCCCAGCaa > 1:2316581/1‑76 (MQ=255) cagcagGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACCCGGCaa > 1:4067091/1‑76 (MQ=255) cagcagGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACACGGCaa > 1:565715/1‑76 (MQ=255) cagcagGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACACGGCaa > 2:5500383/1‑76 (MQ=255) agcagGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAAt < 1:3173554/76‑1 (MQ=255) gcagGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACCGCCATg > 1:623597/1‑76 (MQ=255) gcagGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAAAACGGCAATg > 1:691513/1‑76 (MQ=255) ggCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACACCGCAAAGCTg > 1:4842590/1‑76 (MQ=255) ggCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CCCCTGGCCTGATTATGGCTACCACGGCAATGCTg < 2:4856216/76‑1 (MQ=255) gCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACACCGACATGCtcg > 2:2334961/1‑74 (MQ=255) ttATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACACGGCAAtggtgggg > 1:2541822/1‑74 (MQ=255) ttATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAAACCAGCAATGCTgggg > 2:7592135/1‑74 (MQ=255) aTGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTTGCGaa < 2:6706391/76‑1 (MQ=255) aTGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGaa < 2:6792638/76‑1 (MQ=255) aTGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAACGCCGGCGaa > 1:435592/1‑76 (MQ=255) aTGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACACGGCAATGCTGGCgga > 1:3035013/1‑74 (MQ=255) tGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACACGGCCAAGCCGGCGgaa > 1:3527659/1‑76 (MQ=255) gCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAAc < 1:4533565/76‑1 (MQ=255) gCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACAGCAAGGTCGGAGAAAc > 1:1262990/1‑76 (MQ=255) gCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAAAACCGCAATGCTGGCGAAAc > 1:1531002/1‑76 (MQ=255) cGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAAcc < 2:6097662/76‑1 (MQ=255) gAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACACGGCAATGCTGGCGaaaaac > 1:310618/1‑73 (MQ=255) aaaTCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCAc < 2:1039904/76‑1 (MQ=255) aaaTCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCAc < 2:6957274/76‑1 (MQ=255) aaaTCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCAc < 2:920664/76‑1 (MQ=255) aaTCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACACAGCCATGATGGCGGAAacacc > 2:4227552/1‑75 (MQ=255) tCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCAcgcg < 2:1762159/76‑1 (MQ=255) tCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCAcgcg < 2:5025808/76‑1 (MQ=255) tCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCAcgcg < 2:6369847/76‑1 (MQ=255) tCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCAcgcg < 2:7491730/76‑1 (MQ=255) tCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACAACGGCAATGCTGGGCAAAACAcgcg > 2:3252628/1‑76 (MQ=255) cGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCgag < 1:556315/76‑1 (MQ=255) cGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCgag < 1:6596887/76‑1 (MQ=255) ggCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCgaga < 1:5497890/76‑1 (MQ=255) ggCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCgaga < 1:1960563/76‑1 (MQ=255) gcgcAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGaa < 1:965242/76‑1 (MQ=255) gcgcAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACACGGGCATGCTGGCGCAACCACGCGAGaa > 2:3553015/1‑76 (MQ=255) cgcAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAg < 1:4457821/76‑1 (MQ=255) gcagtgcagtGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAG‑c < 2:3938398/76‑1 (MQ=255) gcagtgcagtGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACACGGCAATGCTGGCGAAACCACGCGAGAAG‑c > 1:1209533/1‑76 (MQ=255) cagtgcagtgCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACACCGCCATGCTGGCGGAACCACGCGAGAAG‑cc > 1:4240828/1‑76 (MQ=255) cagtgcagtgCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACAAGGCAATGCTGGCGCAAACACGAgaggagac > 1:1782607/1‑74 (MQ=255) tgcagtgcGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACCGCAATGCTGGGGAAACCACCCGAGGAG‑CCAtt > 1:4295398/1‑76 (MQ=255) tgcagggc‑GGTTTTGTACCGCCTGCCTTGATTATGGCTACCACGGCAATGCTGGCAAAACCCCGCGAAAAG‑CCAtt < 2:7696898/76‑1 (MQ=255) cagtggGGGTTGTATA‑CGTGAGGCCTGATTATGCCTCCCACGGAAATGCTGGAAAACCCCCGCAAGAAG‑CCATTaa < 2:3930732/76‑1 (MQ=255) cagtgcGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACACGGCCAAGCTGGCGGAACCCAGCGAGAAA‑CCATTaa > 1:3274531/1‑76 (MQ=255) cagtgcGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACACCGCAATGCTGGCGGAACCCCGCCAGAAG‑GCAATaa > 2:1095205/1‑76 (MQ=255) ggtgcGGTTTTTGTC‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAG‑CCATTAA‑c < 2:5406474/75‑1 (MQ=255) tgcGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAG‑CCATTAA‑CCa < 1:874737/76‑1 (MQ=255) ggcGGGTTTTGTA‑CGCCGGGCCTGATTTTGGCTACCACGGAAATGCTGGCGAAACCACGCGAGAAG‑CCATTAA‑CCa < 2:3505491/75‑1 (MQ=255) gcGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTAACAACGCAAAGCTGGCGGAAACACACGCGGAGCCCTTTAA‑CCa > 1:4994063/1‑76 (MQ=255) gggTTTTGTC‑CCCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAG‑CCATTAA‑CCATTa < 1:4237055/76‑1 (MQ=255) ggTTTTGTC‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAG‑CCATTAA‑CCATTAc < 1:705114/76‑1 (MQ=255) gTTTTGTA‑CGCCTGGCCTGATTATGGCTAACACGGCAAAGCTGGCGGAACCACGCGAGAAG‑CCATTAA‑ACATTACg > 1:643158/1‑76 (MQ=255) ttttGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAG‑CCATTAA‑CCATTACgg < 1:243781/76‑1 (MQ=255) ttttGTA‑CGCCTGGCCTGATTATGGCTAACACGGCAATGCTGGCGAAACCACGCGAGAAG‑CCATTAA‑ACATTACgg > 1:5811961/1‑76 (MQ=255) ttGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCGGGCGAAACCACGCGAGAAG‑CCATTAA‑CCATTACGGaa < 1:5409595/76‑1 (MQ=255) tGTA‑CGCCTGGCCTGATTATGGCTAACACCGGAATGCTGGCGGAAACACGCGAGAAA‑CCATTAACCCATTCCGGaa > 2:2412947/1‑76 (MQ=255) tGTA‑CGCCTGGCCTGATTATGGCTAACACCGCAAAGCTGGCGGAAACACGCGAGAAG‑CCATTAA‑ACAATACAGaaa > 2:4499767/1‑76 (MQ=255) tA‑CGCCTGGCCTGATTATGGCTAACACCGCAAAGCTGGGGAAACCCCGCGAGAAG‑CCAATAA‑ACATTACGGaaaat > 2:1453247/1‑74 (MQ=255) tA‑CGCCTGGCCTGATTATGGCTAAAAAGCCACAGTTGGGGACAAAACCCGAGAAG‑CCATTAA‑CCCATACTGAAAtt > 2:1533281/1‑76 (MQ=255) gtccGCCTGCCCTGATTATGGCTACCACGGAAATGCTGGCGAAACCACGCGAAAAG‑CCATTAA‑CCATTACGGAAAt < 1:3364183/73‑1 (MQ=255) cctggcctgATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAG‑CCATTAA‑CCATTACGGAAATtcgtc < 1:3872197/76‑1 (MQ=255) cctggcctgATTAGGGCTACCACGGCAATGCTGGCGAACCCACGCGAGAAG‑CCATTAA‑CCATTACGGAAATtcgtc < 1:6057219/76‑1 (MQ=255) tggcctgATTATGGCTAACACGGCAATGCTGGCGAAACCACGCGAGAAG‑CCATTAA‑CCATTACGGAAATTCGTcgc > 1:560150/1‑76 (MQ=255) ggcctgATTATGGCTAACACGGCAATGCTGGCGAAACCACGCGAGAAG‑CCATTAA‑CCATTACGGAAATTCGTcgcg > 1:7568560/1‑76 (MQ=255) ggcctgATTATGGCTAACACGGCAAAGCTGGCGAAACCACGCGAGAAG‑CCATTAA‑ACATTACGGAAAATTGTcgcg > 2:1961631/1‑76 (MQ=255) ggcctgATTATGCCTACCACGGCAATGCTGGCAAAACCACGGAAGAAG‑CCATTAA‑CCATTACGGAAATTCGTcgcg < 2:7316847/76‑1 (MQ=255) ctggATTAGGGCTCCCACGGCAATGCTGGCGAAACCACGCGAAAAG‑CCATTAA‑CCATTACGGAAATTCGTCGCGGa < 2:576124/73‑1 (MQ=255) ctgTTTAGGGCTACCACGGAAATGCTGGCGAAACCCCGCGAGAAG‑CCATTAA‑CCATTACGGAAATTCGTCGCGGAc < 1:6987602/76‑1 (MQ=255) ctgATTATGGCTACCACGGCAATGCTGCCAAAACCACGCGAGAAG‑CCATTAA‑CCATTACGGAAATTCGTCGCGGAc < 1:6529405/76‑1 (MQ=255) ttaTTATGCCTACCACGGCAATGCTGGCGAACCCCCGCGAAAAG‑CCATTAA‑CCATTACGGAAATTCGTCGCGGACt < 1:7209010/74‑1 (MQ=255) tgATTATGCCTACCACGGCAATGCTGGCGAAACCACGCGAGAAG‑CCATTAA‑CCATTACGGAAATTCGTCGCGGACt < 1:3925552/76‑1 (MQ=255) gATTATGGCTACCACGGGAATGCTGGCGAAACCACGCGAGAAG‑CCCTTAA‑CCATTACGGAAATTCGTCGCGGACTg > 1:7804868/1‑76 (MQ=255) gATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAG‑CCATTAA‑CCATTACGGAAATTCGTCGCGGACTg < 1:3589400/76‑1 (MQ=255) aTTATGGCTAACACCGCAATGCTGGCGGAAACCCCCGAGAAG‑GCATTAA‑CCATTACGGAAAATCGTCGCGGGCTgg > 2:6463922/1‑76 (MQ=255) ttATGGCTAACACGGCAATGCTGGCGGAAACACGCGAGAAG‑CCATTAA‑CCATTACGGAAATTCGTCGCGGGCTGGc > 2:3654003/1‑76 (MQ=255) ttATGGCTAACACGGCAAAGCTGGCGAAAACACACGAGAAA‑CCACTAA‑CCATTACGGAAAATCGTCCCGGGCTggg > 2:4708298/1‑75 (MQ=255) aTGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAG‑CCATTAA‑CCATTACGGAAATTCGTCGCGGACTGGCgg > 2:6321318/1‑76 (MQ=255) tGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAG‑CCATTAA‑CCATTACGGAAATTCGTCGCGGACTGGCggg > 1:7698410/1‑76 (MQ=255) ggCTACCACGGCAATGCTGGCGAAACCACGCGAGAAG‑CCATTAA‑CCATTACGGAAATTCGTCGCGGACTGGCgggg > 1:374628/1‑75 (MQ=255) ggCTACCACGGCAATGCTGGCGAAACCACGCGAGAAG‑CCATTAA‑CCATTACGGAAATTCGTCGCGGACTGGCgggg > 2:3397365/1‑75 (MQ=255) ggtACCCCGGCAATGCTGGCGAATCCACGTGAGAAG‑CCATTAA‑CCATTACGGAAATTCGTCGCGGACTGGCGGGaa < 1:1610325/74‑1 (MQ=255) ctcccACGGCAATGCGGGCAAAACCACGGGAGAAG‑CCATTAA‑CCATTACGGAAATTCGTCGCGGACTGGCGGGaaa < 1:6720640/73‑1 (MQ=255) cTACCACGGCAATGCGGGCAAAACCACGCAAGAAG‑CCATTAA‑CCATTACGGAAATTCGTCGCGGACTGGCGGGaaa < 1:1980585/76‑1 (MQ=255) aCCACGGCAATGCTGGCGAAACCACGCGAGAAG‑CCATTAA‑CCATTACGGAAATTCGTCGCGGACTGGCGGGgaaga > 1:1041155/1‑74 (MQ=255) | CTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTA‑CGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAG‑CCATTAA‑CCATTACGGAAATTCGTCGCGGACTGGCGGGAAATC > REL606/2889509‑2889658 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |