| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 324622 | 235 (0.990) | 3 (0.010) | 3/136 | 22.1 | 1.3% | coding (758/1452 nt) | prpD | 2‑methylcitrate dehydratase |
| ? | REL606 | = 3925835 | 261 (1.220) | coding (197/1485 nt) | gppA | guanosine pentaphosphatase/exopolyphosphatase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 293 total aligned reads displayed.
ACGGCAAGACGTAATGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGAC > REL606/3925760‑3925910 | aCGGCAAGACGTAATGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACa < 1:1853182/76‑1 (MQ=255) ggCAAGACGTAATGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAgg < 1:7553636/76‑1 (MQ=255) gCAAGACGTAATGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGgc > 2:7279261/1‑76 (MQ=255) cAAGACGTAATGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGgcg > 2:7380805/1‑76 (MQ=255) cAAGACGTAATGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGgcg > 1:5828293/1‑76 (MQ=255) aaGACGTAATGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGgcgc > 2:3494883/1‑76 (MQ=255) aaGACGTAATGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGgcgc > 2:7511116/1‑76 (MQ=255) aaGACGTAATGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGgcgc > 1:5317012/1‑76 (MQ=255) gACGTAATGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAg > 2:6015140/1‑76 (MQ=255) aCGTAGTGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGAGATATCTTGCAGACGTTCAGCAAACAGGCGCAGa < 2:1211064/76‑1 (MQ=255) aCGTAATGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGa > 2:3756516/1‑76 (MQ=255) cGTAATGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGAc > 2:537761/1‑76 (MQ=255) cGTAATGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGAc > 2:6607495/1‑76 (MQ=255) tAATGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACAt > 2:5399508/1‑76 (MQ=255) tAATGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACAt < 2:3094123/76‑1 (MQ=255) tAAGGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACAt < 1:2373079/76‑1 (MQ=255) aaTGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACAtt > 2:4676258/1‑76 (MQ=255) aaTGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACAtt > 2:3242269/1‑76 (MQ=255) aaTGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACAtt > 2:2897831/1‑76 (MQ=255) aTGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTg < 1:3715821/76‑1 (MQ=255) tCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCa > 2:6860303/1‑76 (MQ=255) gCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAAc < 2:4524310/76‑1 (MQ=255) ctgTAGCGACATCGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAAcc < 2:2545233/74‑1 (MQ=255) ccGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAAcc > 2:4877125/1‑76 (MQ=255) cGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACcg > 1:383618/1‑76 (MQ=255) cGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACcg < 1:1265510/76‑1 (MQ=255) cGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACcg > 2:2341324/1‑76 (MQ=255) gTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACcgc > 1:2523521/1‑76 (MQ=255) aGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCgcgc > 1:6432344/1‑76 (MQ=255) cGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTc > 1:3656906/1‑76 (MQ=255) gACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTcc > 1:1419948/1‑76 (MQ=255) aaCGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCAtt < 1:6059080/76‑1 (MQ=255) aaCGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCAtt < 1:5852727/76‑1 (MQ=255) cgcgAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGc > 1:4814305/1‑76 (MQ=255) gcgAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCt < 1:326934/76‑1 (MQ=255) cgAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCtt < 1:4692440/76‑1 (MQ=255) gAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTc < 1:3440779/76‑1 (MQ=255) aTTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCAt > 1:26984/1‑76 (MQ=255) aTTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCAt < 1:1914405/76‑1 (MQ=255) ttGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTa > 2:4205863/1‑76 (MQ=255) tGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAg < 1:5415165/76‑1 (MQ=255) tGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAg < 2:5173830/76‑1 (MQ=255) gCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGa < 1:4987835/76‑1 (MQ=255) cGAGGGAGGGATATCTTGCAGACGTTCGGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGAc > 2:6478435/1‑76 (MQ=255) cGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGAc < 1:5184287/76‑1 (MQ=255) cGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGAc < 1:2869989/76‑1 (MQ=255) gagggaggGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACa < 1:7298528/76‑1 (MQ=255) gagggaggGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACa < 1:2268590/76‑1 (MQ=255) gagggaggGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACa > 1:1118582/1‑76 (MQ=255) agggagggATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAg > 2:1294269/1‑76 (MQ=255) gggagggaTATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAgg < 2:5665801/76‑1 (MQ=255) ggagggaTATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAggg < 1:6677124/76‑1 (MQ=255) gagggaTATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGc > 2:1465435/1‑76 (MQ=255) agggaTATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCa > 2:832503/1‑76 (MQ=255) gggaTATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCAt < 2:6976334/76‑1 (MQ=255) gggaTATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCAt > 2:708831/1‑76 (MQ=255) gaTATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCAttt > 1:2123778/1‑76 (MQ=255) gaTATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCAttt < 2:2801381/76‑1 (MQ=255) gaTATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCAttt < 1:4447835/76‑1 (MQ=255) gaTATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCAttt > 2:397196/1‑76 (MQ=255) tatCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTc > 2:5470391/1‑76 (MQ=255) tatCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTc < 2:5287304/76‑1 (MQ=255) atCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCg > 2:2269782/1‑76 (MQ=255) atCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCg > 1:4320279/1‑76 (MQ=255) tCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGc > 1:3586815/1‑76 (MQ=255) tCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGc < 1:6956647/76‑1 (MQ=255) cTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCt > 1:5970044/1‑76 (MQ=255) tGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTAt > 1:835555/1‑76 (MQ=255) tGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTAt > 1:5997565/1‑76 (MQ=255) tGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTAt > 2:1100039/1‑76 (MQ=255) tGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTAt > 2:3283152/1‑76 (MQ=255) aGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCa < 2:4249412/76‑1 (MQ=255) aGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCa > 1:7512308/1‑76 (MQ=255) aGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCa > 2:2947599/1‑76 (MQ=255) aGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCa > 2:4708511/1‑76 (MQ=255) gACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAg < 2:3377626/76‑1 (MQ=255) gACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAg < 2:5444479/76‑1 (MQ=255) aCGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAgg < 1:6297760/76‑1 (MQ=255) aCGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAgg > 2:6074715/1‑76 (MQ=255) cGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGc > 1:1699302/1‑76 (MQ=255) gTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGcc > 1:5617359/1‑76 (MQ=255) gTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGcc > 2:2645150/1‑76 (MQ=255) ttCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGCca < 1:2008125/76‑1 (MQ=255) ttCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGCca < 2:7612460/76‑1 (MQ=255) ttCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGCca < 1:7148148/76‑1 (MQ=255) ttCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGCca > 1:7198207/1‑76 (MQ=255) tCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGCcag > 1:5362538/1‑76 (MQ=255) cAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGCcagc < 2:4625630/76‑1 (MQ=255) aGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGCcagca < 1:5122379/76‑1 (MQ=255) aGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGCcagca > 2:5835034/1‑76 (MQ=255) gCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGCcagcag < 1:116172/76‑1 (MQ=255) gCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGCcagcag > 1:3406063/1‑76 (MQ=255) gCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGCcagcag < 1:4021287/76‑1 (MQ=255) gCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGCcagcag < 2:5891751/76‑1 (MQ=255) aaaCAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGCCAGCAGcc > 1:5512450/1‑76 (MQ=255) aaCAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGCCAGCAGCCa < 2:554719/76‑1 (MQ=255) aCAGGCGCAGTCATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGCCAGCAGCCAg < 1:5743732/76‑1 (MQ=255) aCAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGCCAGCAGCCAg < 2:1602391/76‑1 (MQ=255) cAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGa < 1:1509429/76‑1 (MQ=255) cAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGa < 1:6586913/76‑1 (MQ=255) | ACGGCAAGACGTAATGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGGATATCTTGCAGACGTTCAGCAAACAGGCGCAGACATTGCCAACCGCGCTCCATTGCTTCATTAGACAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGAC > REL606/3925760‑3925910 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |