| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 475,296 | Δ1 bp | coding (10/1677 nt) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 475,296 | 0 | C | . | 98.9% | 859.4 / 2.0 | 179 | coding (10/1677 nt) | ybaL | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| Reads supporting (aligned to +/- strand): ref base C (2/0); major base . (62/113); minor base G (2/0); total (66/113) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.04e-01 | |||||||||||
Only 100 of 186 total aligned reads displayed.
GTTTATTGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGGCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAATTACAGGT > REL606/475224‑475366 | ttATTGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATg < 2:6350816/76‑1 (MQ=255) aTTGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGGGGCGGGATGc > 1:3547869/1‑76 (MQ=255) tGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCAtt < 2:5640523/76‑1 (MQ=255) tGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGG‑GGGGTGATGCAtt > 1:3896500/1‑76 (MQ=255) ggCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTc < 2:7531663/76‑1 (MQ=255) ggCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTc < 2:4544686/76‑1 (MQ=255) gCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTcc > 1:7355179/1‑76 (MQ=255) gCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTcc > 1:6354378/1‑76 (MQ=255) ccAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCg < 2:8146193/76‑1 (MQ=255) ccAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCg < 1:665421/76‑1 (MQ=255) ccAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCg < 1:854978/76‑1 (MQ=255) ccAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCg < 2:1509483/76‑1 (MQ=255) cAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGt < 1:4997444/76‑1 (MQ=255) aGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGtc < 2:3214997/76‑1 (MQ=255) gCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GGGATGCATTCCGtcc > 1:7632098/1‑75 (MQ=255) cATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGtctc < 2:1442569/76‑1 (MQ=255) aTGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTcc > 2:2503016/1‑76 (MQ=255) tGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCt < 2:4607278/76‑1 (MQ=255) gCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCtt < 1:589226/76‑1 (MQ=255) gCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCtt > 1:4557688/1‑76 (MQ=255) gCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCtt < 2:4870091/76‑1 (MQ=255) gCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCtt > 2:290264/1‑76 (MQ=255) gCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCtt < 2:2818549/76‑1 (MQ=255) ccGAGGATAAAGGCGAGCAGAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCttt < 2:3783505/76‑1 (MQ=255) ccGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCttt > 2:1095964/1‑76 (MQ=255) cGAGGATAAAGGCGAGCACAAGGCTGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTGCtttt < 2:5547845/76‑1 (MQ=255) cGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCtttt < 1:3810297/76‑1 (MQ=255) cGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCtttt > 1:1558708/1‑76 (MQ=255) gAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTc < 1:5238634/76‑1 (MQ=255) gAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTc > 2:5087249/1‑76 (MQ=255) gAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTc > 2:5365867/1‑76 (MQ=255) gAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTc > 1:6266667/1‑76 (MQ=255) ggATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCt < 1:2547997/76‑1 (MQ=255) aTAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCtgg < 1:4318029/76‑1 (MQ=255) tAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCtggt > 1:4760062/1‑76 (MQ=255) tAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCtggt > 1:53684/1‑76 (MQ=255) tAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCtggt < 2:7147515/76‑1 (MQ=255) aaaGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCtggtg > 2:5394956/1‑76 (MQ=255) aaaGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCtggtg > 2:7269907/1‑76 (MQ=255) aaGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCtggtgg < 2:1814281/76‑1 (MQ=255) aaGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCtggtgg > 1:1221234/1‑76 (MQ=255) aGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTggtggt < 2:5834887/76‑1 (MQ=255) aGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTggtggt < 2:6224457/76‑1 (MQ=255) ggCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGtt < 1:6021835/76‑1 (MQ=255) gCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTa > 2:5934094/1‑76 (MQ=255) gCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTa < 2:6271499/76‑1 (MQ=255) cGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTAt < 1:1917886/76‑1 (MQ=255) gAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTAtt < 2:8077952/76‑1 (MQ=255) aGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTg < 1:107574/76‑1 (MQ=255) cacaAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTc < 2:3187922/76‑1 (MQ=255) cacaAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTc > 1:6048566/1‑76 (MQ=255) caAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCa < 2:3252372/76‑1 (MQ=255) caAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCa < 1:5643496/76‑1 (MQ=255) caAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCa < 1:8025658/76‑1 (MQ=255) caAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCAATCCGTCTCCTTTTCCTGGTGGTTATTGTCCa < 2:6466971/76‑1 (MQ=255) aaGGCCGCCAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTccct > 2:539515/1‑74 (MQ=255) gccgccAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCAtttt > 2:5138618/1‑76 (MQ=255) gccgccAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCAtttt > 1:2670900/1‑76 (MQ=255) gccgccAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCAtttt < 1:3088429/76‑1 (MQ=255) ccgccAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCAttttt < 2:5031916/76‑1 (MQ=255) cgccAACAATGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTg < 1:8125214/76‑1 (MQ=255) caacaaTGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGcc < 1:3749121/76‑1 (MQ=255) aacaaTGGGGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCg > 2:4166755/1‑76 (MQ=255) acaaTGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCgg > 1:7535328/1‑76 (MQ=255) acaaTGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCgg > 1:5177431/1‑76 (MQ=255) aaTGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGa < 2:3599934/76‑1 (MQ=255) aaTGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGa > 2:7699197/1‑76 (MQ=255) aaTGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGa < 2:2963584/76‑1 (MQ=255) aaTGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGa > 2:3596207/1‑76 (MQ=255) aTGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGaa > 1:5272012/1‑76 (MQ=255) aTGGTGGTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGaa > 1:4605191/1‑76 (MQ=255) tggtggTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGaaa > 2:4245857/1‑76 (MQ=255) tggtggTGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGaaa < 1:4649345/76‑1 (MQ=255) tgtggtgATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGaaaa < 2:3515886/75‑1 (MQ=255) ggtggtGATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGaaaa < 1:5028995/76‑1 (MQ=255) gtggtgATAAGCGGGGTGGCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGaaaa > 2:6055307/1‑76 (MQ=255) gtggtgATAAGCGGGGTGG‑GGGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAAc > 1:5263060/1‑76 (MQ=255) tggtgATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAAcc < 1:5488595/76‑1 (MQ=255) ggtgATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCa < 2:3428380/76‑1 (MQ=255) ggtgATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCa < 2:4603377/76‑1 (MQ=255) ggtgATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCa < 1:7208390/76‑1 (MQ=255) gtgATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCaa < 1:4338537/76‑1 (MQ=255) gtgATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCaa < 1:4832295/76‑1 (MQ=255) gtgATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCaa > 2:7910953/1‑76 (MQ=255) gtgATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCaa < 1:5320269/76‑1 (MQ=255) tgATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCaaa > 2:7573207/1‑76 (MQ=255) gATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCaaaa < 2:3670651/76‑1 (MQ=255) gATAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCaaaa < 2:2328147/76‑1 (MQ=255) aTAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAAt < 2:7862942/76‑1 (MQ=255) aTAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAAt < 2:2138583/76‑1 (MQ=255) tAAGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAAtt < 1:2985490/76‑1 (MQ=255) aGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAATTAc < 1:4952994/76‑1 (MQ=255) aGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAATTAc < 1:2754416/76‑1 (MQ=255) aGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAATTAc < 2:6784658/76‑1 (MQ=255) aGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAATTAc < 2:182805/76‑1 (MQ=255) aGCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAATTAc < 1:580466/76‑1 (MQ=255) gCGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAATTACa < 1:2959897/76‑1 (MQ=255) cGGGGTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAATTACAg < 2:247656/76‑1 (MQ=255) ggggTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAATTACAgg < 1:5067223/76‑1 (MQ=255) ggggTGG‑GTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAATTACAgg > 2:844617/1‑76 (MQ=255) | GTTTATTGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGGCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAATTACAGGT > REL606/475224‑475366 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |