| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,875,625 | 1 | . | T | 98.9% | 771.7 / ‑0.6 | 178 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base T (67/109); total (67/111) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.28e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 214 total aligned reads displayed.
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695 | aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa < 2:6111848/76‑1 (MQ=255)aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa > 2:1955435/1‑76 (MQ=255)aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa > 1:2439148/1‑76 (MQ=255)aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa < 2:2013199/76‑1 (MQ=255) tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑t > 2:795357/1‑76 (MQ=255) gCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt < 2:2823329/76‑1 (MQ=255) gCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt < 2:3536372/76‑1 (MQ=255) gCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt < 2:5332518/76‑1 (MQ=255) gCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt > 2:7613576/1‑76 (MQ=255) cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑t > 1:4247762/1‑76 (MQ=255) attattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑tt < 1:6645200/76‑1 (MQ=255) ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑ttt < 2:7728111/76‑1 (MQ=255) ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑ttt > 2:1102542/1‑76 (MQ=255) tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑tttt > 2:114425/1‑76 (MQ=255) attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑ttttt > 1:1395602/1‑75 (MQ=255) attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑ttttt > 1:7382444/1‑75 (MQ=255) ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑tttttc < 2:2858458/76‑3 (MQ=255) ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑tttttc > 1:2221805/1‑74 (MQ=255) ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑tttttc > 1:8221211/1‑74 (MQ=255) tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑tttttca > 1:5489191/1‑73 (MQ=255) tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑tttttca > 1:2818079/1‑73 (MQ=255) tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑tttttca < 1:198076/76‑4 (MQ=255) aCATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCg > 1:6234215/1‑76 (MQ=255) cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGt > 2:5439985/1‑76 (MQ=255) cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGt > 2:7465918/1‑76 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTg > 1:3055112/1‑76 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTg > 2:6275028/1‑76 (MQ=255) tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGa > 2:638814/1‑76 (MQ=255) tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGa < 2:351171/76‑1 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGaa > 2:7421058/1‑76 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATAGTGaa > 2:4114006/1‑76 (MQ=255) cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGaaa < 1:5175446/76‑1 (MQ=255) cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGaaa < 1:987955/76‑1 (MQ=255) gcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAAt < 1:5430744/76‑1 (MQ=255) cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATg < 2:7855050/76‑1 (MQ=255) cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATg < 2:776211/76‑1 (MQ=255) gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATgg < 2:7913282/76‑1 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGAc > 2:511083/1‑76 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGAc > 1:6252642/1‑76 (MQ=255) cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACa < 1:3324001/76‑1 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACag < 1:4132811/76‑1 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACag < 2:1257365/76‑1 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACag < 1:899581/76‑1 (MQ=255) gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACaga > 1:1498220/1‑76 (MQ=255) gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACaga > 1:3716376/1‑76 (MQ=255) aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACagag < 1:4373606/76‑1 (MQ=255) aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACagag > 1:7965105/1‑76 (MQ=255) cTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAgg < 1:4978427/76‑1 (MQ=255) tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGa > 2:2134027/1‑76 (MQ=255) tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGa < 2:4837568/76‑1 (MQ=255) gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGAt > 1:3739270/1‑76 (MQ=255) gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGAt < 2:518144/76‑1 (MQ=255) gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGAt < 1:2021757/76‑1 (MQ=255) gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGAt < 1:5718368/76‑1 (MQ=255) gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGAt > 1:3841258/1‑76 (MQ=255) gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGAt > 1:6109681/1‑76 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATa < 1:393233/76‑1 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATa < 2:3008408/76‑1 (MQ=255) aaTTTGAGAACGAATTTGAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTTCATCGTGAAATGGACAGAGGATa < 2:1507104/76‑1 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATaa < 2:710539/76‑1 (MQ=255) aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATaaa < 1:2100300/76‑1 (MQ=255) aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATaaa < 1:2580499/76‑1 (MQ=255) tttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAAt < 2:5141202/76‑1 (MQ=255) ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAAtt > 2:3947127/1‑76 (MQ=255) gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGt < 1:3405629/76‑1 (MQ=255) aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCa < 1:4888760/76‑1 (MQ=255) aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCa < 1:4730795/76‑1 (MQ=255) cGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAAt < 2:5747178/76‑1 (MQ=255) cGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAAt > 2:7290786/1‑76 (MQ=255) gAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa < 1:3996756/76‑1 (MQ=255) aaTTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 1:7099039/76‑1 (MQ=255) aTTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc < 1:6406979/76‑1 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg < 1:1069944/76‑1 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg < 1:1566237/76‑1 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg < 2:1914483/76‑1 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 1:6142465/1‑76 (MQ=255) aaCCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt < 1:4015507/76‑1 (MQ=255) gCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcc < 2:6926648/76‑1 (MQ=255) cTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATccc > 2:3263804/1‑76 (MQ=255) ttCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc > 1:3365101/1‑76 (MQ=255) ttCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc > 2:3210246/1‑76 (MQ=255) tCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg > 1:4845107/1‑76 (MQ=255) cACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGc > 1:7911208/1‑76 (MQ=255) aCCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCt < 1:3498535/76‑1 (MQ=255) aCCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCt < 1:5320450/76‑1 (MQ=255) aCCTTGAAAAAACTACA‑‑TTTATTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCt < 2:8296913/76‑1 (MQ=255) ccTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg < 2:1059107/76‑1 (MQ=255) cTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa < 2:381410/76‑1 (MQ=255) ttGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc > 1:8176246/1‑76 (MQ=255) ttGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc < 2:5383907/76‑1 (MQ=255) tGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 2:5812434/1‑76 (MQ=255) tGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg < 2:2194481/76‑1 (MQ=255) aaaaaaCTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa < 2:6750076/76‑1 (MQ=255) aaaaaCTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa > 1:1014782/1‑76 (MQ=255) aaaaaCTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa > 2:132017/1‑76 (MQ=255) aaaaaCTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa < 1:1868612/76‑1 (MQ=255) aaaCTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc > 1:7027402/1‑76 (MQ=255) aaaCTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc > 2:4410263/1‑76 (MQ=255) aaCTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg < 1:2668323/76‑1 (MQ=255) aaCTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg < 2:4264487/76‑1 (MQ=255) | ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |