| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2518512 = | 305 (1.180) | 141 (0.570) | 3/144 | 20.0 | 28.8% | intergenic (‑66/+147) | purC/nlpB | phosphoribosylaminoimidazole‑ succinocarboxamidesynthase/lipoprotein |
| ? | REL606 | = 2583279 | 406 (1.640) | intergenic (‑449/+3) | iscR/yfhQ | DNA‑binding transcriptional repressor/predicted methyltransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 174 total aligned reads displayed.
ACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTT‑CACGCCGCATCCGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2518589‑2518512‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTT < REL606/2583279‑2583205 ACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTT‑CACGCCGCATCCGA < 1:2964279/76‑1 CGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTT‑CACGCCGCATCCGAC > 2:6495454/1‑76 GCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTT‑CACGCCGCATCCGACA > 1:6216618/1‑76 GCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTT‑CACGCCGCATCCGACA > 2:538218/1‑76 GCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTT‑CACGCCGCATCCGACA < 1:3801987/76‑1 ACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTT‑CACGCCGCATCCGACA > 1:5053666/1‑55 ACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTT‑CACGCCGCATCCGACA < 2:5053666/55‑1 gcCGTAGTTCGGAAAAGGCGTC‑CCCGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGG < 1:7629981/74‑1 TAGTTCGGATAAGGCGTT‑CCCGCCCCAACCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTA < 1:8230555/76‑1 tgCGGAAAGGGCGTT‑CACGCCGCATCCGCCAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAG < 2:1403372/74‑1 TCGAATAGGCCGTT‑CGCGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGT < 1:5223631/76‑1 tGGATAAGGCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTG > 2:2669164/2‑76 gGGAAAAGGCGTG‑CACGCCCCATCGGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTG < 2:1332265/75‑1 CGGGTAAGGGTTC‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTG < 1:2098980/76‑1 CGGATAAGGCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTG > 1:1133977/1‑76 CGGATAAGGCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTG > 1:2173461/1‑76 CGGATAAGGCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTG > 2:5754536/1‑76 GGATAAGGCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGA > 2:3482852/1‑76 GGATAAGGCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGA > 2:5831450/1‑76 GGAAAAGGGGTTCCACGCCGCATCCGCCAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTG < 2:7275849/76‑1 GGAAAAGGGGTC‑CCCGCCGCACCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGA < 1:4915588/76‑1 gaaAAGGGGTA‑CCCGCCCCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAA < 2:5231172/73‑1 aagAAGTCGTT‑CACGCCTGTTCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAA < 2:6373582/73‑1 GATAAGCCGCA‑CACGCCGCGTCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAA < 2:4501176/76‑1 ATAAGGCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAAC > 2:4360743/1‑76 ATAAGGCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAAC > 2:2150938/1‑76 ATAAGGCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAAC > 2:6783139/1‑76 ATAAGGCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAAC > 2:2639690/1‑76 aAAGGCGTT‑CCCGCCCCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACA < 2:3266260/75‑1 TAAGGCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACA > 2:6226061/1‑76 TAAGGCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACA > 1:400022/1‑76 TAAGGCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACA > 1:4224890/1‑76 TAAGGCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACA > 2:6633432/1‑76 agGGCGTA‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAG < 2:57026/74‑1 AAGGCTTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAG < 1:1865797/76‑1 AAGGCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAG > 1:7238602/1‑76 AAGGCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAG > 2:7962972/1‑76 AAGGCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAG > 2:1753943/1‑76 AGGCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGA > 1:6386973/1‑76 AGGCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGA > 2:4316/1‑76 AGGCGTC‑CCCGCGGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGA < 1:1575764/76‑1 gcgGTT‑CACGCCGCATCCGCCAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAA < 2:2909663/73‑1 GGCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAA > 1:2480337/1‑76 GCGTT‑CCCGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAAC < 1:179065/76‑1 GCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAAC > 2:4711755/1‑76 GCGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAAC > 2:3843895/1‑76 CGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACATAACC > 2:8128137/1‑76 CGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACC > 1:4002648/1‑76 CGTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACC > 2:8319970/1‑76 GTT‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCG > 1:6085311/1‑76 T‑CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTA > 2:3444138/1‑76 CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAG > 1:4080355/1‑76 CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAG > 2:7720232/1‑76 CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAG > 1:1033487/1‑76 cCGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGG < 1:3658301/75‑1 cCGCCGCATCCACCAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGG < 2:4812206/75‑1 ACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGG > 1:1943240/1‑76 ACGCCGCACACGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGG < 2:3498940/76‑1 CGCCGCATCGAACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGT < 1:389714/76‑1 CGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGT < 1:3943032/76‑1 GCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGgc > 2:2359696/1‑74 GCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTC > 1:5395614/1‑76 GCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTC > 2:4758996/1‑76 GCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTC > 1:4748126/1‑76 GCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATG > 2:7087647/1‑39 GCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATG < 1:7087647/39‑1 CCGCACCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCG < 2:5024046/76‑1 CGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGG > 2:1357110/1‑76 CGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCCTAGGCCGG > 2:7138448/1‑76 GCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGA > 2:3001255/1‑76 cacCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGAT < 1:1279534/73‑1 aaCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATA < 2:5639087/74‑1 ATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGGCGGATA > 2:897689/1‑76 ATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGCAGGGCGGATA > 2:593423/1‑76 tcaGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAA < 2:1922044/73‑1 gCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAA < 1:1437922/75‑1 aatGACATCCGTTGCCTGATTCGACGCGTAATGCGTCTTATCATGCCTACAGTGAACATAACCGTAGGTCGGATAA < 2:3940884/73‑1 TCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAA > 2:1470831/1‑76 CCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAG > 1:6321060/1‑76 CCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAG > 2:6130162/1‑76 CCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAG > 1:3123394/1‑76 CCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGGCGGATAAG > 2:3750702/1‑76 CGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGGCGGACAAGG > 2:7401574/1‑76 GACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGC > 2:7460263/1‑76 GACAGCCGTTGCCTGATGCGACACGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGC > 1:7396068/1‑76 ACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCTTACAGTGAACAGAACCGTAGGTCGGATAAGGCG > 2:1632438/1‑76 ACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCG > 2:4266066/1‑76 ACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCG < 1:6525371/76‑1 ACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCG > 2:4832451/1‑76 CAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGT > 2:3031885/1‑76 CAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGT < 1:3051909/76‑1 CAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGT > 2:1079618/1‑76 CAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGT < 2:743073/76‑1 CAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGCCGGATAAGGCGT > 2:7880502/1‑76 AGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTT > 2:4987665/1‑76 AGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTT > 2:1086379/1‑76 AGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTT > 1:2640564/1‑76 AGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTT < 2:3609060/76‑1 AGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTT > 2:3693999/1‑76 AGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCCTAGGGCGGATAAGGCGTT > 2:1149734/1‑76 ACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTT‑CACGCCGCATCCGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2518589‑2518512‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTT < REL606/2583279‑2583205 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |