Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 720,464 | 0 | C | G | 50.0% | 0.2 / 22.1 | 20 | A22G (GCC→GGC) | phrB | deoxyribodipyrimidine photolyase, FAD‑binding |
Reads supporting (aligned to +/- strand): ref base C (4/6); new base G (10/0); total (14/6) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.08e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 106 total aligned reads displayed.
AGGAGTTTTATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGCCGCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATAACAT > REL606/720391‑720539 | aGGAGTTTTATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctggcg > 2:8361971/1‑76 (MQ=255) aGGAGTTTTATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctggcg > 2:8320164/1‑76 (MQ=255) aGGAGTTTTATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctgccg < 2:6768984/76‑1 (MQ=255) gAGTTTTATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctgccgcc < 2:2673380/76‑1 (MQ=255) aGTTTTATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctgccgcc‑t < 2:4372579/76‑1 (MQ=255) aGTTTTATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctgccgcc‑t < 1:2689819/76‑1 (MQ=255) gTTTTATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctgccgcc‑tg < 1:4442986/76‑1 (MQ=255) gTTTTATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctgccgcc‑tg < 1:2297103/76‑1 (MQ=255) ttttATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctggcgcc‑cg‑c > 1:1054547/1‑76 (MQ=255) ttttATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctggcgcc‑cg‑c > 2:1067235/1‑76 (MQ=255) ttttATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctggcgcc‑cg‑c > 1:181170/1‑76 (MQ=255) ttttATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctgccgcc‑tg‑c < 1:5089141/76‑1 (MQ=255) tttATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctggggcc‑cg‑cc > 1:60837/1‑76 (MQ=255) tttATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctgccgcc‑tg‑cc > 1:2825572/1‑76 (MQ=255) ttATGATTCCCCATCTGGTCTGGTTCCGCCAGAATTTACGTCGGCAGGATAATCTCGCACTGGctgccccc‑tg‑ccg < 2:6710850/76‑1 (MQ=255) ttATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctggggcc‑cg‑ccc > 2:3581869/1‑75 (MQ=255) ttATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctggcggc‑cg‑ccc > 1:4978749/1‑75 (MQ=255) ttATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctggcgcc‑cg‑ccc > 1:1965067/1‑75 (MQ=255) ttATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctggcgcc‑cg‑ccc > 1:3709454/1‑75 (MQ=255) tATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctggcgcc‑cg‑cccc > 2:1950501/1‑74 (MQ=255) aTGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctggcggc‑cg‑ccgcc > 2:1795141/1‑75 (MQ=255) aTGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctggcgcc‑gg‑ccgcc > 1:3870114/1‑75 (MQ=255) aTGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctggcgcc‑cg‑ccccc > 1:5760397/1‑73 (MQ=255) aTGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGGGGC‑CG‑CCGCa > 1:8332936/1‑76 (MQ=255) tGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctggcgcc‑cg‑ccgcca > 1:959287/1‑74 (MQ=255) tGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGCGCC‑CG‑ACGCac > 1:3460797/1‑75 (MQ=255) gATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGctggcgcc‑cg‑ccgccac > 1:625903/1‑73 (MQ=255) aTTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGCGCC‑GG‑CCGCCAtt > 1:5664496/1‑76 (MQ=255) aTTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGCGCC‑CG‑CCGCCAtt > 1:5495811/1‑76 (MQ=255) ttACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGCGCC‑CG‑CCGCCATTc > 1:4255015/1‑76 (MQ=255) tACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGGGCC‑CGCCCGCAAtcg > 2:6204402/1‑74 (MQ=255) tACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGCGCC‑CG‑CCGCCAATCg > 1:457663/1‑76 (MQ=255) ccATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGCGCC‑TG‑CCGCCATTCGTCt > 1:3953316/1‑76 (MQ=255) aTCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGCGCC‑CG‑GCGCCAATCGTCttc > 2:7039889/1‑74 (MQ=255) ctggtctggtTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGCGCC‑CG‑CCCCCATTCGTCTGCAc > 1:321780/1‑76 (MQ=255) tggtctggtTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGGGCC‑CG‑CCCCCCATCGTCTGCAcc > 2:3765643/1‑75 (MQ=255) tggtctggtTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGCGCC‑CG‑CCCCCCATCCTCTGCAcg > 1:6206513/1‑76 (MQ=255) gtctggtTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGGGCC‑CG‑CCGCCCCTCGTCTTCAcgcc > 2:8350115/1‑75 (MQ=255) ggtTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGCGGC‑CC‑CCGCCCATCGTCTTCACCCGTggt > 1:3988015/1‑74 (MQ=255) ggtTCCGCCAGGTTTTCCTTCAGCAGAATAATCCCGCACTGGCTCCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCt < 2:7610845/76‑1 (MQ=255) gtTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGCGCC‑TG‑CCGCAATTCGTCTGCACGCGTggcg > 1:8090466/1‑73 (MQ=255) gtTTCGCAGGGATTTGCGTCTGCAGAATATTCTCGCTCTGCCGCCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTg < 2:6002955/76‑1 (MQ=255) tttCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGCGCC‑CG‑CCCCCCATCGTCTTCTCGCGCGGTgg > 2:7644549/1‑76 (MQ=255) ttgcGCCAGTATTTAGGTCTGCAGAATACCCCCGCCTTGCCTCCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTgg < 2:2244740/73‑1 (MQ=255) ttgcGCCAGGTTTTACGTCGGCGCGATAATCCCGCCCGGCCTCCCGCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTgg < 1:3934289/73‑1 (MQ=255) cGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGGGCC‑CG‑CCGCCACTCCTCTGCCCGCGGGCTggggg > 2:7150961/1‑73 (MQ=255) cGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGCGCC‑CG‑CCGCCATTCGTCTTCCCCCCGGCTGGCgg > 1:6555278/1‑75 (MQ=255) cGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGCCGCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGt > 1:1798654/1‑76 (MQ=255) ccAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGCGCC‑CG‑CCCCCATTCGTCTTCACGCGGGGTGGCggtt > 1:813186/1‑73 (MQ=255) cAGGATTTCCTTCTGCACGATAATCCCGCCCGGGCGGCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTtat < 1:910335/76‑1 (MQ=255) cAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGCGCC‑CG‑CCGCAATTCGTCTGCACGCGCGCTGGCGCtat > 1:1213439/1‑76 (MQ=255) aGGATTTACGTCTGCACGATAATCTCGCACTGGCTGGCGCC‑TG‑CCGGAATTCGTCTGCACGCGTGCTGGCGGtata > 1:1966180/1‑76 (MQ=255) gtttttACGTCTGCAAGATACTCTCGCCGTGGCTCCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTtatat < 2:271451/73‑1 (MQ=255) ggttttCCGTCTGCAGGATAATCCCGCACTGGCTCCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTtatat < 2:4659464/73‑1 (MQ=255) tttttCCGTCTGCACAATAATCTCGCCCTGGCCCCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTtatata < 1:6713449/74‑1 (MQ=255) taTTTCCGTCTGCACAATATCCCCCCCCTGCCTCCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTtatata < 1:4621101/75‑1 (MQ=255) ttttGCGCCTCCACAATAATCTCGCCCGGGCTCCCGCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTatatat < 1:4066959/75‑1 (MQ=255) tttCCGTCTGCCAGATACTCCCGCCCTGCCCCCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATc < 2:6478063/76‑1 (MQ=255) tttACGTCTGCACGATAATCTCGCACTGGCTGGCGCC‑CG‑CCGGCAATCCTCTGCACGCGCGCTGGCGTTatatata > 1:1038078/1‑75 (MQ=255) ttACGTCTGCACGATAATCTCGCACTGGCTGGGGCC‑CG‑CCGCCAATCGTCTTCCCGCGCGCTGGGGGTatttatat > 2:2650637/1‑74 (MQ=255) tctgTCTGAACAATAATCGCGCCCTGCCTCCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGc < 1:6604242/73‑1 (MQ=255) tcGTCCGCACGATAATCTCGCCGGGGCTGCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCt < 1:5633250/75‑1 (MQ=255) aCGTCTGCACGATAATCTCGCACTGGCTGGGGCCGCG‑CCCCAATT‑TTCTCCACCCGCGCGGGCGTTGTATATTGCt > 2:3660422/1‑76 (MQ=255) cGTCTGCCCGATACTCCCGCCCTGGCTGCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTa < 2:3636592/76‑1 (MQ=255) tCTGCACGATAATCTCGCACTGGCTGCCGCC‑CG‑CCGCCATTCGTCTGCACCCCCGCTGGGGGTTTATATCGCTaca > 1:5586474/1‑76 (MQ=255) cTGCACGATAATCTCGCACTGGCTGGCGCC‑CG‑CCGCCATTCGTCTGCACGCGTGCTGGCGGTATATATCGCTacac > 1:1497442/1‑76 (MQ=255) cTGCACGATAATCTCGCACTGGCTGGCGCC‑CG‑CCCCCAATCGTCTGCACCCGGGCTGGCGGTTTATATCGCTacac > 2:7923937/1‑76 (MQ=255) cTGCACGATAATCTCGCACTGGCTGCCGCC‑TG‑CCGCCATTCGTCTGCACCCGTGGTGGGGGTATATATCGCTacac > 1:3783361/1‑76 (MQ=255) cTGCACGATAATCTCGCACTGGCTGCCGCC‑TC‑CCGCCATTCCCCTGCCCCCGTGCTGGGGTTTTATATTGCCacac > 1:4522078/1‑76 (MQ=255) tccACGATACCCGCGCTCTCGCTCCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTAcacc < 1:4419467/74‑1 (MQ=255) tGCACGATAATCTCGCACTGGCTGGCGCC‑CG‑CCGCCCTTCGTCTGCACGCGGGCTGGCGGTATATATTTCTAcacc > 2:4318216/1‑76 (MQ=255) ggCACGATACCCCCGCCCTGCCTCCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTAcacc < 2:6340055/75‑1 (MQ=255) gccacaATAATCCCGCACTGCCGCCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTAcacc < 1:6899750/74‑1 (MQ=255) gccACGATATCCTCGCCGGGCCTCCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTAcacc < 2:791374/74‑1 (MQ=255) gCACGATAATCTCGCACTGGCTGGCGCC‑CG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTAcacca > 1:1434100/1‑76 (MQ=255) gCACGATAATCTCGCACTGGCTGCCGCC‑TG‑CCGCAATTCGTCTTCCCCCGTGCTGGCGGTTTATTTCGCTAcacca > 1:1199857/1‑76 (MQ=255) cACTATAATCCCGCCCTGGCTGCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTAcaccac < 1:3829329/76‑1 (MQ=255) aCGATAATCTCGCCCTGGCTGCCGCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACg < 2:2567412/76‑1 (MQ=255) aCGATAATCTCGCACTGGCTGGCGCC‑CG‑CCCCCAATCGTCTTCTCCCCCGCTGGCGGTTTATATTTCTTcaccacc > 2:3348617/1‑75 (MQ=255) caaTAGTCTCGCCGTGGCGGCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGc < 2:4929666/74‑1 (MQ=255) cGATAATCTCGCACTGGCTGGCGCC‑TG‑CCGCAATTCGTCTGCACGCGTGCCGGCGTTATATATTGCTAcaccaacc > 1:707895/1‑73 (MQ=255) gATAATCTCGCACTGGCTGGCGCC‑CG‑CCGCCAATCGTCTGCCCCCGCGCTTGGGGTTTATATCGCTACACCAcccc > 2:4372231/1‑76 (MQ=255) aTAATCTCGCACTGGCTGGCCCC‑CG‑CCCCCATTTCTCTGCACGCCGGCCGGGGGTATATATTGCTTCACCACAccc > 2:6661725/1‑75 (MQ=255) tAATCTCGCACTGGCTGGCGCC‑CG‑CCGCCATTCGTCTTCACCCGGGCTGGCGGTTTATATCGCTTCACCCCCCCAg > 2:2871819/1‑76 (MQ=255) aaTCTCGCACTGGCTGGCGCC‑CG‑CCCCCATTTGTCTGCACCCGTGCTTGGGGTTTATATCGCTACACCCCCCCaca > 2:8152880/1‑74 (MQ=255) aTCTCGCCCGGGCTCCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTg < 2:8320882/76‑1 (MQ=255) ccccgcgCTGGCTGCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTgg < 2:5227659/73‑1 (MQ=255) cTGGCTGCCGCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCCGTGGGCGACGc > 1:3169068/1‑76 (MQ=255) cTGGCTGCCGCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGc > 2:110568/1‑76 (MQ=255) cTGGCTGACCCC‑TG‑CCGCAATTCGTCAGCACGCCTGCTGGCGTTATATATCGCTGAAACACGCAAGCGGGCGACGc > 2:2030324/1‑76 (MQ=255) tGGCTGCCGCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACCCCACGCCAGGGGGCGACGCa > 2:2857306/1‑76 (MQ=255) ggCTCCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCAt < 2:6202407/76‑1 (MQ=255) ggCCGCCCCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCAt < 2:4123238/76‑1 (MQ=255) gCTGCCGCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATa > 1:1632217/1‑76 (MQ=255) tgccgcc‑tg‑ccgcAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATAAc > 2:6025175/1‑76 (MQ=255) tgccgcc‑tg‑ccgcAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATAAc > 2:825339/1‑76 (MQ=255) ccccgcc‑tg‑ccgcAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATAAc < 1:6285822/74‑1 (MQ=255) gccgcc‑tg‑ccgcAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATAACa > 1:5817405/1‑76 (MQ=255) gccgcc‑tg‑ccgcAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATAACa > 1:3725496/1‑76 (MQ=255) ccgcc‑tg‑ccgcAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATAACAt > 1:3662379/1‑76 (MQ=255) | AGGAGTTTTATGATTACCCATCTGGTCTGGTTTCGCCAGGATTTACGTCTGCACGATAATCTCGCACTGGCTGCCGCC‑TG‑CCGCAATTCGTCTGCACGCGTGCTGGCGTTATATATCGCTACACCACGCCAGTGGGCGACGCATAACAT > REL606/720391‑720539 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |