| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 1506449 | 213 (0.920) | 6 (0.030) | 5/136 | 19.4 | 3.3% | coding (72/792 nt) | ydcC | hypothetical protein |
| ? | REL606 | = 3554988 | 162 (0.770) | intergenic (+168/‑78) | yrhC/yhhI | b4552; predicted protein fragment/predicted transposase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGAGAACAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1506368‑1506449‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaatatCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGCCGTTG < REL606/3554988‑3554915 GGAGAACAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTG > 2:411818/1‑76 GAGAACAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGG < 2:3301131/76‑1 GAGAACAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGG < 2:5706242/76‑1 GAGAACAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGG > 2:5923705/1‑76 GAGAAAAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGG < 2:824783/76‑1 AGAACAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGA < 1:6940657/76‑1 AGAACAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGA > 2:2908433/1‑76 AGAACAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGA < 1:6123930/76‑1 GAACAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAA > 2:869831/1‑76 GAACAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAA < 2:490267/76‑1 GAACAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAA < 2:716613/76‑1 AACAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAAT < 1:7016227/76‑1 AACAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAAT < 1:925862/76‑1 AACAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAAT > 1:1841854/1‑76 AACAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTACCCCCGATTACAGACAAGCCTGGAAAGTGGAAT < 1:4859932/76‑1 ACAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAATA < 1:5662783/76‑1 ACAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAATA < 1:1037826/76‑1 ACAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAATA < 1:1508815/76‑1 ACAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAATA < 2:2993407/76‑1 CAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAATAT < 1:3867230/76‑1 CAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAATAT < 2:5053014/76‑1 CAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAATAT > 1:2323636/1‑76 CAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAATAT < 1:3576781/76‑1 AATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAATATCTC < 2:58451/76‑1 ATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAATATCTCA < 2:1458460/76‑1 TGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAATATCTCAA < 2:7062217/76‑1 TGGAACATAAAAAACTGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAATATCTCAA < 2:6928783/76‑1 ATGGAACATATTTCTATTATCCCCGATTACAGACGAGCCTGGAAAGTGGAATATCTCAATTTTTAAACATAAAATG < 2:3567531/76‑1 TTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAATATCTCAATTTTTAAACATAAAATGCGAATTATTTA < 2:791239/76‑1 GGAATATCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGC > 1:1041468/1‑76 AATATCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGCCG > 2:4656588/1‑76 AATATCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGCCG > 2:5953912/1‑76 AATATCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGCCG > 2:2729708/1‑76 AATATCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGCCG > 2:3815215/1‑76 AATATCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGCCG > 2:4981856/1‑76 ATATCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGCCGT > 2:5573899/1‑76 ATATCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGCCGT > 2:3906662/1‑76 TATCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGCCGTT > 2:5751165/1‑76 TATCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGCCGTT < 2:1756265/76‑1 TATCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGCCGTT > 2:110086/1‑76 TATCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGCCGTT < 1:266259/76‑1 TATCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGCCGTT > 2:860978/1‑76 ATCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGCCGTTG > 2:3852917/1‑76 ATCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGCCGTTG > 2:6072515/1‑76 ATCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGCCGTTG < 1:4966829/76‑1 ATCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGCCGTTG > 1:2178963/1‑76 ATCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGCCGTTG < 2:4812760/76‑1 ATCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGCCGTTG < 1:1409671/76‑1 GGAGAACAAAATGGAACTTAAAAAAATGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1506368‑1506449‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaatatCTCAATTTTTAAACATAAAATGCGAATTATTTAGTGCAAAAAGTGAACTTTTGATGATCTTTCCCTGGCCGTTG < REL606/3554988‑3554915 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |