| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,571,413 | G→T | intergenic (+179/‑139) | uspA → / → yhiP | universal stress global response regulator/predicted transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,571,413 | 0 | G | T | 99.5% | 899.7 / ‑3.2 | 213 | intergenic (+179/‑139) | uspA/yhiP | universal stress global response regulator/predicted transporter |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (105/107); total (106/107) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.98e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.47e-01 | |||||||||||
Only 100 of 218 total aligned reads displayed.
CTGCGTTCGCAATCAAAATCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCAGCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTA > REL606/3571340‑3571485 | cTGCTTTCAAAATAAAACCCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCAgag < 2:6664443/76‑3 (MQ=255)cTGCGTTCGCAATCAAAACCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCt < 1:6045452/76‑1 (MQ=255) tGCTTTCGCAATAAAAACCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTg < 2:5356128/76‑1 (MQ=255) ggggTTCCCAATCAAAACCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTg < 2:1384019/73‑1 (MQ=255) ccGTCCGCAATCAAACCCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTgg < 1:6100596/75‑1 (MQ=255) gTTCGCAATCAAACCCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGtt < 2:4589933/76‑1 (MQ=255) gTTCGCAATAAAAACCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGtt < 1:1995491/76‑1 (MQ=255) ttCGCAATCAAAATCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTa > 1:3263798/1‑76 (MQ=255) cGCAATCAAAATCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTAtt > 1:4859917/1‑76 (MQ=255) cGCAATCAAAATCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTAtt > 1:3755239/1‑76 (MQ=255) cAATAAAAACCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTAtttt < 1:3182091/76‑1 (MQ=255) aaaTCAAACCCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTAtttt < 1:6945685/75‑1 (MQ=255) acAAAATCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCtg < 2:7480506/75‑1 (MQ=255) aaaaaaCCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCtg < 2:6255396/74‑1 (MQ=255) aaaaaTCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCtgt < 2:1309776/75‑1 (MQ=255) aaaaTCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCtgtt > 2:7214/1‑76 (MQ=255) aaaaCCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCtgtt < 2:6528460/76‑1 (MQ=255) aaaTCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCtgttg > 2:5464608/1‑76 (MQ=255) acccccAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTa < 1:2279472/74‑1 (MQ=255) cccccAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTaa < 2:5029399/75‑1 (MQ=255) ccccaAGCCAATACAATATTTATACCCTCCTTTTTTTCCATCA‑TAGTGTGATCATCTGGTTATTTTCTGTTGTAAt < 1:5067532/75‑1 (MQ=255) ccccAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAAt < 1:7258263/76‑1 (MQ=255) ccccAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAAt < 1:7305216/76‑1 (MQ=255) cccAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATa < 1:6655012/76‑1 (MQ=255) cccAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATa > 2:3184132/1‑76 (MQ=255) cccAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATa < 1:1597163/76‑1 (MQ=255) cccAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATa < 1:7020623/76‑1 (MQ=255) cAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAgt < 2:2628582/76‑1 (MQ=255) gCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAgtgt < 1:5437830/76‑1 (MQ=255) ccAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTa > 2:4226283/1‑76 (MQ=255) caatacaataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTAt > 2:2049665/1‑76 (MQ=255) caatacaataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTAt > 1:174863/1‑76 (MQ=255) aatacaataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTAtt < 2:7077547/76‑1 (MQ=255) atacaataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTa < 1:2918653/76‑1 (MQ=255) atacaataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTa > 1:2796829/1‑76 (MQ=255) tacaataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTaa < 1:5876603/76‑1 (MQ=255) tacaataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTaa > 2:5658200/1‑76 (MQ=255) acaataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAAt < 2:4978708/76‑1 (MQ=255) acaataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAAt < 1:7126656/76‑1 (MQ=255) caataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATc > 2:2462079/1‑76 (MQ=255) caataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATc > 1:20501/1‑76 (MQ=255) aataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCt < 2:4799203/76‑1 (MQ=255) atatTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTa < 1:6471469/76‑1 (MQ=255) tatTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTAt > 1:5980690/1‑76 (MQ=255) atTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTAtt > 1:5654320/1‑76 (MQ=255) atTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTAtt < 2:1626547/76‑1 (MQ=255) atTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTAtt > 1:1478000/1‑76 (MQ=255) tttAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTc > 1:1161686/1‑76 (MQ=255) tttAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTc > 1:94396/1‑76 (MQ=255) tttAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTc > 2:5941994/1‑76 (MQ=255) tttAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTc < 1:6641109/76‑1 (MQ=255) ttAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCa > 2:7018198/1‑76 (MQ=255) ttAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCa > 1:4239289/1‑76 (MQ=255) ttAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCa < 2:3845476/76‑1 (MQ=255) tAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCAc < 1:1895929/76‑1 (MQ=255) caaCACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCAc > 2:7294482/2‑76 (MQ=255) aaCACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCAcc > 2:6226424/1‑76 (MQ=255) cacCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGc < 2:5135923/76‑1 (MQ=255) acCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCa < 2:4151949/76‑1 (MQ=255) ccATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCAt < 1:4926054/76‑1 (MQ=255) atcatATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCa > 1:3453290/1‑76 (MQ=255) catATTTTCCGTCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAat < 2:2760583/76‑1 (MQ=255) catATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAat < 1:3404737/76‑1 (MQ=255) catATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAat < 1:6779265/76‑1 (MQ=255) catATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAat > 1:6272168/1‑76 (MQ=255) atatTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAata < 1:3701390/76‑1 (MQ=255) atatTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAata > 1:5799313/1‑76 (MQ=255) tatTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAatat < 1:5357433/76‑1 (MQ=255) tatTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAatat < 2:1040128/76‑1 (MQ=255) atTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATAtt > 1:7150494/1‑76 (MQ=255) ttttCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTa < 1:1089101/76‑1 (MQ=255) ttCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAg > 1:4112838/1‑76 (MQ=255) ttCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAg < 1:2513868/76‑1 (MQ=255) ttCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAg > 1:3680852/1‑76 (MQ=255) ttCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAg > 2:1713269/1‑76 (MQ=255) ttCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAg > 2:3611582/1‑76 (MQ=255) tCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGa > 2:4034135/1‑76 (MQ=255) ccATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGaa > 1:1194058/1‑76 (MQ=255) ccATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGaa > 2:1888109/1‑76 (MQ=255) catcatTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAAt < 2:4330677/76‑1 (MQ=255) catcatTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAAt < 1:2180377/76‑1 (MQ=255) catcatTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAAt < 2:4833526/76‑1 (MQ=255) tcatTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAAtct < 1:2366624/76‑1 (MQ=255) tcatTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAAtct > 1:4775535/1‑76 (MQ=255) catTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAAtctc < 2:1817381/76‑1 (MQ=255) atTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATctct < 1:6621700/76‑1 (MQ=255) tAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGa < 1:3045545/76‑1 (MQ=255) tAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGa > 2:4716353/1‑76 (MQ=255) tAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGa < 2:3519782/76‑1 (MQ=255) aGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGAc > 1:4406620/1‑76 (MQ=255) aGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGAc > 1:4198594/1‑76 (MQ=255) tgtgATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAg > 1:2975947/1‑76 (MQ=255) tgtgATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAg < 2:6751562/76‑1 (MQ=255) tgtgATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAg > 1:4829857/1‑76 (MQ=255) tgtgATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAg > 2:2286555/1‑76 (MQ=255) tgATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGAt > 1:4649411/1‑76 (MQ=255) tgATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGAt > 2:6196064/1‑76 (MQ=255) gATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATg > 1:7461477/1‑76 (MQ=255) atcatcTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGt < 1:7486101/76‑1 (MQ=255) atcatcTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGt > 2:4471363/1‑76 (MQ=255) | CTGCGTTCGCAATCAAAATCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCAGCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTA > REL606/3571340‑3571485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |