| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 1144177 = | 258 (1.310) | 5 (0.030) | 3/134 | 16.6 | 1.9% | coding (226/417 nt) | flgN | export chaperone for FlgK and FlgL |
| ? | REL606 | 1144199 = | 277 (1.580) | coding (204/417 nt) | flgN | export chaperone for FlgK and FlgL | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACTGCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAACGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1144259‑1144177‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaacgctATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTT > REL606/1144199‑1144272 ACTGCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGT < 2:4602424/76‑1ACTGCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGT > 1:5673811/1‑76ACTGCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGT < 2:1246189/76‑1ACTGCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGT > 2:1390470/1‑76ACTGCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGT > 1:3574444/1‑76ACTGCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGT > 1:3294167/1‑76ACTGCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGT < 2:2015278/76‑1 CTGCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTC < 1:6117931/76‑1 CTGCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTC < 1:5284562/76‑1 CTGCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTC < 1:2991281/76‑1 CTGCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTC < 1:273221/76‑1 TGCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCA < 1:3199855/76‑1 TGCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCA < 1:3757661/76‑1 TGCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCA < 1:1578239/76‑1 TGCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCA > 2:5681531/1‑76 TGCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCA < 1:5151490/76‑1 GCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAA > 1:6202102/1‑76 GCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAA > 1:5937634/1‑76 GCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAA > 1:5218117/1‑76 GCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAA < 1:911581/76‑1 GCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAA < 1:2332556/76‑1 GCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAA < 2:3814318/76‑1 CTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAAC > 2:5404724/1‑76 CTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAAC < 1:5500502/76‑1 TGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTNAACG < 2:3646542/76‑1 TGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAACG > 1:5377774/1‑76 TGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAACG > 2:696520/1‑76 GGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATGCAGCAAATAGCGTTGATATTAGTCAACGC < 2:3347812/76‑1 GGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAACGC > 1:375771/1‑76 GGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAACGC > 2:2886249/1‑76 GGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAACGC < 2:1900930/76‑1 GGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAACGC > 2:5406239/1‑76 GGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAACGC > 2:1311109/1‑76 GGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAACGC > 1:4077065/1‑76 GGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAACGC < 2:5011158/76‑1 GCGACGCTGGATTACCTCGAACGGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAACGCT < 1:1405369/76‑1 GCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAACGCT < 2:2883592/76‑1 GCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAACGCT < 2:5678938/76‑1 GCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAACGCT < 2:3628448/76‑1 GCGACGCGGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAACGCT < 2:6330938/76‑1 CGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAACGCTA < 2:6159866/76‑1 GACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGGTGATATTAGTCAACGCcgg > 2:89633/1‑73 AACCCAATACAGCAAATAGCGTTGATATTAGTCAACGCTATTTGCTGTATTGGGTTC > 2:3320164/1‑57 AACCCAATACAGCAAATAGCGTTGATATTAGTCAACGCTATTTGCTGTATTGGGTTC > 2:4390621/1‑57 AACCCAATACAGCAAATAGCGTTGATATTAGTCAACGCTATTTGCTGTATTGGGTTC < 1:4390621/57‑1 AACCCAATACAGCAAATAGCGTTGATATTAGTCAACGCTATTTGCTGTATTGGGTTC < 1:3320164/57‑1 TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTT > 2:6042367/1‑76 CAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTT > 1:590207/1‑76 CAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTT > 1:1032677/1‑76 AACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTT > 1:6217985/1‑76 ACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTT < 1:4682908/76‑1 ctCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTG < 1:693211/74‑1 CGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTG > 1:628366/1‑76 CGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTG < 1:4484163/76‑1 GCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGT > 1:3961733/1‑76 CTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTT < 2:519892/76‑1 CTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTT > 2:860981/1‑76 ACTGCTGGCGACGCTGGATTACCTCGAACAGTTACGCAGGAAAGAACCCAATACAGCAAATAGCGTTGATATTAGTCAACGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1144259‑1144177‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaacgctATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTT > REL606/1144199‑1144272 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |