| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3683510 = | 178 (0.910) | 6 (0.040) +TAGCAGCGCTGCTA |
4/122 | 15.0 | 4.0% | coding (1201/1401 nt) | ECB_03437 | putative permease |
| ? | REL606 | 3683510 = | 178 (0.910) | coding (1201/1401 nt) | ECB_03437 | putative permease | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAAAATAAACAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3683524‑3683510‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGCTGTTTATTTTT > REL606/3683510‑3683524 |||||||||||||| AAAAATAAACAGCAGTAGCAGCGCTGCTACTGCTGTTTATTTT > 1:6232906/1‑43AAAAATAAACAGCAGTAGCAGCGCTGCTACTGCTGTTTATTTT < 2:3567210/43‑1AAAAATAAACAGCAGTAGCAGCGCTGCTACTGCTGTTTATTTT < 2:6232906/43‑1 AAAATAAACAGCAGTAGCAGCGCTGCTACTGCTGTTTATTTTT < 1:2456495/43‑1 AAAATAAACAGCAGTAGCAGCGCTGCTACTGCTGTTTATTTTT < 1:3567210/43‑1 AAAATAAACAGCAGTAGCAGCGCTGCTACTGCTGTTTATTTTT > 2:2456495/1‑43 |||||||||||||| AAAAATAAACAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3683524‑3683510‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGCTGTTTATTTTT > REL606/3683510‑3683524 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |