| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 819771 | 162 (0.830) | 6 (0.030) +CTGCTA |
4/138 | 16.0 | 3.7% | coding (107/1134 nt) | ybhS | predicted transporter subunit: membrane component of ABC superfamily |
| ? | REL606 | 3683510 = | 178 (0.910) | coding (1201/1401 nt) | ECB_03437 | putative permease | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 182 total aligned reads displayed.
TCTTCCGGCATGAACTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTCGCTTGGCGGGATCGCGGCGA > REL606/3683435‑3683585 | tcttcCGGCATGAACTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGcc > 2:4502596/1‑76 (MQ=255)tcttcCGGCATGAACTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGcc < 1:1010006/76‑1 (MQ=255)tcttcCGGCATGAACTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGcc > 1:4552681/1‑76 (MQ=255) cttcCGGCATGAACTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCct < 1:1619632/76‑1 (MQ=255) cttcCGGCATGAACTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCct > 2:5092259/1‑76 (MQ=255) tcCGGCATGAACTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCctgc > 2:3600322/1‑76 (MQ=255) tcCGGCATGAACTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCctgc > 2:723131/1‑76 (MQ=255) ccGGCATGACCTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCctgct < 1:5389626/76‑1 (MQ=255) ccGGCATGAACTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCctgct < 2:2215675/76‑1 (MQ=255) ccGGCATGAACTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCctgct < 2:4135805/76‑1 (MQ=255) ccGGCATGAACTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCctgct > 2:2607838/1‑76 (MQ=255) cGGCATAACCTTCGCCTTCAATCCGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCctgctg < 2:3382669/76‑1 (MQ=255) ggCATGAACTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGt > 1:6038352/1‑76 (MQ=255) cATGAACTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGCTCATCAGCCTGCTGttt > 1:1475228/1‑76 (MQ=255) cATGAACTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGttt < 1:5758783/76‑1 (MQ=255) cATGAACTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGttt < 2:76143/76‑1 (MQ=255) cATGAACTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGttt < 2:1227642/76‑1 (MQ=255) tGAACTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTAt > 1:335890/1‑76 (MQ=255) gAACTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTAtt > 1:3108360/1‑76 (MQ=255) aaCTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTAttt > 1:2663795/1‑76 (MQ=255) aaCTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTAttt > 2:2501235/1‑76 (MQ=255) aaCTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTAttt < 1:1850991/76‑1 (MQ=255) tCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGt > 2:966522/1‑76 (MQ=255) cTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGcc < 2:2911509/76‑1 (MQ=255) ttCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCt > 1:3462743/1‑76 (MQ=255) ttCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCt > 1:3917369/1‑76 (MQ=255) ttCAATCTGTCTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCt > 1:3546945/1‑76 (MQ=255) tCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTa < 2:2039719/76‑1 (MQ=255) cAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTAc > 1:2797579/1‑76 (MQ=255) cAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTAc > 1:6127122/1‑76 (MQ=255) cAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTAc < 1:3250162/76‑1 (MQ=255) aaTCTTTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTAcc > 2:3512115/1‑76 (MQ=255) aaTCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTAcc > 2:5702422/1‑76 (MQ=255) tCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAg > 2:296157/1‑76 (MQ=255) gTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCt > 1:2105432/1‑76 (MQ=255) gTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCt > 1:4919439/1‑76 (MQ=255) gTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCt > 1:5167078/1‑76 (MQ=255) gTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCt > 1:1517876/1‑76 (MQ=255) tttttCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTg < 2:5145665/76‑1 (MQ=255) tttttCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTg > 2:6170133/1‑76 (MQ=255) tttCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGc > 2:4649456/1‑76 (MQ=255) ttCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCg < 1:152759/76‑1 (MQ=255) ttCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCg > 1:3669364/1‑76 (MQ=255) tcatcaAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGt > 2:5004376/1‑76 (MQ=255) tcatcaAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGt > 1:845511/1‑76 (MQ=255) catcaAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTg > 2:1642008/1‑76 (MQ=255) catcaAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTg > 1:1797893/1‑76 (MQ=255) catcaAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTg > 1:1664478/1‑76 (MQ=255) catcaAGCTGCCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTGGCTTACCAGCATGGCGTg > 2:2883018/1‑76 (MQ=255) atcaAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTgg > 1:4091800/1‑76 (MQ=255) tcaAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGa > 2:5537769/1‑76 (MQ=255) tcaAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGa < 1:2979223/76‑1 (MQ=255) caAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGaa > 2:4766686/1‑76 (MQ=255) caAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGaa > 2:4732163/1‑76 (MQ=255) caAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGaa > 2:2304593/1‑76 (MQ=255) caAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGaa > 1:4831631/1‑76 (MQ=255) caAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGaa < 1:1933230/76‑1 (MQ=255) caAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGaa > 2:5982189/1‑76 (MQ=255) aaGCTGGCCTGTGCTTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGaaa < 2:5323558/76‑1 (MQ=255) aaGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGaaa < 2:4709241/76‑1 (MQ=255) cTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAAcc < 1:3880802/76‑1 (MQ=255) tGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCa < 1:25858/76‑1 (MQ=255) tGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCa > 1:5599600/1‑76 (MQ=255) tGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCa > 1:5461625/1‑76 (MQ=255) tGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCa > 2:5960672/1‑76 (MQ=255) ggCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAg < 1:2607838/76‑1 (MQ=255) ggCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAg > 2:1134431/1‑76 (MQ=255) ggCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAg > 2:1560549/1‑76 (MQ=255) ggCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGATTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAg > 2:2096569/1‑76 (MQ=255) gaccTGGGCCTCCAGCGCCGGGATCATCAGCCAGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAg > 2:2912306/3‑76 (MQ=255) ccTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGAc > 1:122296/1‑76 (MQ=255) ccTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGAc > 1:985236/1‑76 (MQ=255) ccTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGAc > 1:936902/1‑76 (MQ=255) ccTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGAc < 2:1886525/76‑1 (MQ=255) ccTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGAc > 2:791199/1‑76 (MQ=255) cTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGAcc < 1:3171862/76‑1 (MQ=255) gggCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGc > 1:4391617/1‑76 (MQ=255) gCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCa > 2:1030159/1‑76 (MQ=255) ccTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAg > 2:3885907/1‑76 (MQ=255) cTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGt > 2:3751104/1‑76 (MQ=255) ccAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTc > 2:4901644/1‑76 (MQ=255) ccAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTc > 2:365553/1‑76 (MQ=255) aGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTCGc > 2:631195/1‑76 (MQ=255) cggggATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTCGCTTgg < 2:1802193/74‑1 (MQ=255) ccGGTATCCTCAGCCTGCTTTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTCGCTTgg < 2:4810242/76‑1 (MQ=255) ccGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTCGCTTgg < 1:2293688/76‑1 (MQ=255) ggAGCACCAGCCTGCTGTTTATTTTTGCCGCCTCCCAGCCTGGCGTGGAAAACCAGACCGCCAGTTCGCTTGGCgg < 2:1656800/76‑1 (MQ=255) gATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTCGCTTGGCggg < 1:64928/76‑1 (MQ=255) atcaGCCTGCTTTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTCGCTTGGCGGGATcg < 2:2970840/76‑1 (MQ=255) atcaGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTCGCTTGGCGGGATcg < 2:3906020/76‑1 (MQ=255) caGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTCGCTTGGCGGGATcgcg > 2:3936604/1‑76 (MQ=255) caGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTCGCTTGGCGGGATcgcg < 2:3169224/76‑1 (MQ=255) aGCCTGCTTTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTCGCTTGGCGGGATCgcgg < 1:1732518/76‑1 (MQ=255) aGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTCGCTTGGCGGGATCgcgg < 1:1815723/76‑1 (MQ=255) aGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTCGCTTGGCGGGATCgcgg < 2:4618844/76‑1 (MQ=255) gCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTCGCTTGGCGGGATCgcggc > 2:5720995/1‑76 (MQ=255) ccTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTCGCTTGGCGGGATCgcggcg > 1:4768760/1‑76 (MQ=255) ctgctgTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTCGCTTGGCGGGCTCgcggcgc > 1:1138433/1‑75 (MQ=255) ctgctgTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTCGCTTGGCGGGATCGCGGCGa > 2:5430343/1‑76 (MQ=255) ctgctgTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTCGCTTGGCGGGATCGCGGCGa > 2:3705890/1‑76 (MQ=255) | TCTTCCGGCATGAACTTCGCCTTCAATCTGTTTTTCATCAAGCTGGCCTGGGCCTCCAGCGCCGGGATCATCAGCCTGCTGTTTATTTTTGTCGCCTACCAGCCTGGCGTGGAAAACCAGACCGCCAGTTCGCTTGGCGGGATCGCGGCGA > REL606/3683435‑3683585 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |