| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 1,496,226 | C→A | intergenic (‑134/‑133) | ansP ← / → yncG | L‑asparagine transporter/predicted enzyme |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,496,226 | 0 | C | A | 98.9% | 1180.7 / ‑1.6 | 281 | intergenic (‑134/‑133) | ansP/yncG | L‑asparagine transporter/predicted enzyme |
| Reads supporting (aligned to +/- strand): ref base C (0/3); new base A (132/146); total (132/149) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 285 total aligned reads displayed.
ATCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATCGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACAAATCC > REL606/1496153‑1496298 | aTCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGa < 2:1274842/76‑1 (MQ=255)aTCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGa > 2:555740/1‑76 (MQ=255)aTCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGa < 1:1172715/76‑1 (MQ=255)aTCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGa < 2:4451511/76‑1 (MQ=255)aTCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGa < 1:2467072/76‑1 (MQ=255)aTCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGa > 1:2184471/1‑76 (MQ=255) tCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGAt < 1:1506584/76‑1 (MQ=255) tCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGAt < 1:4138997/76‑1 (MQ=255) tCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGAt > 2:802102/1‑76 (MQ=255) ccTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATa > 2:2781033/1‑76 (MQ=255) ccTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATa < 1:404840/76‑1 (MQ=255) cTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATaa < 1:1475367/76‑1 (MQ=255) cTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATaa > 2:749531/1‑76 (MQ=255) tGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATaaa < 2:244084/76‑1 (MQ=255) tGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATaaa < 1:383632/76‑1 (MQ=255) ggCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAAc > 1:3128742/1‑76 (MQ=255) cGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGa < 1:1897561/76‑1 (MQ=255) gatgatAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGAt > 2:4649868/1‑76 (MQ=255) atgatAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATg < 2:2421801/76‑1 (MQ=255) gatAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCa > 1:1707676/1‑76 (MQ=255) gatAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCa < 1:1119750/76‑1 (MQ=255) tAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCaaa < 2:5567906/76‑1 (MQ=255) aGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCaaaa < 1:5828882/76‑1 (MQ=255) ttATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACa > 1:5059736/1‑76 (MQ=255) tATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACAt > 1:2956297/1‑76 (MQ=255) aTCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATc > 1:3049539/1‑76 (MQ=255) cACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATccc > 1:2661619/1‑76 (MQ=255) ccATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCt < 2:4863047/76‑1 (MQ=255) ccATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCt < 2:3626313/76‑1 (MQ=255) ccATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCt < 1:2377146/76‑1 (MQ=255) ccATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCt < 2:89896/76‑1 (MQ=255) cATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCtt < 1:2348948/76‑1 (MQ=255) attattCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTa < 1:4463768/76‑1 (MQ=255) ttattCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTAc > 1:3720660/1‑76 (MQ=255) ttattCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTAc > 1:6114884/1‑76 (MQ=255) attCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACaa < 2:4278520/76‑1 (MQ=255) ttCTTTTTGGGTATTAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAAt > 2:1630268/1‑76 (MQ=255) tCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATc > 1:5775630/1‑76 (MQ=255) tCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATc > 1:1004462/1‑76 (MQ=255) tCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATc < 1:3768435/76‑1 (MQ=255) ttttGTGGGAATAAAACTATCGGAGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATcc < 2:5742287/75‑1 (MQ=255) cTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATcc > 1:4942743/1‑76 (MQ=255) ttATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTg > 1:4728465/1‑76 (MQ=255) aTGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGaa < 1:5865846/76‑1 (MQ=255) aTGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGaa > 1:3507835/1‑76 (MQ=255) tGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAg > 2:1982352/1‑76 (MQ=255) gggTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAgg > 2:599920/1‑76 (MQ=255) gggTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAgg > 1:1246378/1‑76 (MQ=255) ggTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAggg < 2:2518907/76‑1 (MQ=255) gTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAgggg < 2:5810947/76‑1 (MQ=255) gTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAgggg < 1:716638/76‑1 (MQ=255) tataAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGa < 1:4851299/76‑1 (MQ=255) tataAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGa < 2:149036/76‑1 (MQ=255) tataAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGa < 1:1363699/76‑1 (MQ=255) tataAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGa > 1:3675220/1‑76 (MQ=255) ataAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGCAGGGGaa > 2:4983742/1‑76 (MQ=255) ataAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaa > 2:3285018/1‑76 (MQ=255) ataAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaa > 1:6256324/1‑76 (MQ=255) taAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaat > 2:2455682/1‑76 (MQ=255) taAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaat > 2:1347074/1‑76 (MQ=255) taAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaat < 1:1036915/76‑1 (MQ=255) taAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaat < 1:5257431/76‑1 (MQ=255) taAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaat < 1:4203452/76‑1 (MQ=255) taAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaat < 1:6333448/76‑1 (MQ=255) taAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaat < 1:5290607/76‑1 (MQ=255) caaagCTGTCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaat < 1:5824030/75‑1 (MQ=255) aaaaCTATCGGCCCAGCTTCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaata < 1:554463/76‑1 (MQ=255) aaccTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaataa < 1:282419/73‑1 (MQ=255) aaCTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaataat > 1:5151052/1‑76 (MQ=255) aCTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAataata < 1:440670/76‑1 (MQ=255) cTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATAc > 1:3352847/1‑76 (MQ=255) cTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATAc > 2:1695828/1‑76 (MQ=255) tATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACa < 2:5355523/76‑1 (MQ=255) tATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACa > 1:836939/1‑76 (MQ=255) tATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACa > 1:4225837/1‑76 (MQ=255) aTCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGACTAATACaa > 2:4570425/1‑76 (MQ=255) aTCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACaa < 1:3412167/76‑1 (MQ=255) aTCGGCGCAGCATCCTACCCGTAATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACac > 2:6128567/1‑75 (MQ=255) cGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACt > 1:317257/1‑76 (MQ=255) cGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACt > 1:2027618/1‑76 (MQ=255) gcgcAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGa < 2:1137559/76‑1 (MQ=255) gcagcaTCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACg < 2:3422899/76‑1 (MQ=255) gcagcaTCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACg < 1:2784178/76‑1 (MQ=255) gcagcaTCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACg > 2:3123207/1‑76 (MQ=255) gcagcaTCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACg < 1:5460420/76‑1 (MQ=255) cagcaTCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGa < 2:3839060/76‑1 (MQ=255) agcaTCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGaa > 1:645841/1‑76 (MQ=255) caTCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGaaaa > 2:2050580/1‑76 (MQ=255) ccTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAAt > 1:3861727/1‑76 (MQ=255) tACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGa < 1:5945909/76‑1 (MQ=255) aCCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGAc < 2:4535303/76‑1 (MQ=255) cccGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACa < 1:4341705/76‑1 (MQ=255) cccGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACa < 1:3522518/76‑1 (MQ=255) cccGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACa < 1:5206920/76‑1 (MQ=255) cccGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACa < 1:2292264/76‑1 (MQ=255) ccGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACaa > 1:255915/1‑76 (MQ=255) cGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACaaa < 1:4162655/76‑1 (MQ=255) gTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACAAAt < 2:1063035/76‑1 (MQ=255) tataGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACAAATcc > 1:4502895/1‑76 (MQ=255) tATCGATAAACGATGCAAAACATCCCCATACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACAAATcc < 1:6354583/76‑1 (MQ=255) | ATCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATCGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACAAATCC > REL606/1496153‑1496298 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |