| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,875,625 | 1 | . | T | 99.3% | 612.9 / ‑2.9 | 146 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (62/83); total (63/83) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.32e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.12e-01 | |||||||||||
Only 100 of 178 total aligned reads displayed.
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695 | aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa > 2:6970257/1‑76 (MQ=255)aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa < 2:1896481/76‑1 (MQ=255) tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑t < 1:6075761/76‑1 (MQ=255) tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑t < 1:307244/76‑1 (MQ=255) tAGCATTATTCAACATACGCCTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑t < 1:4021358/76‑1 (MQ=255) aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑tt > 1:6131486/1‑76 (MQ=255) aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑tt < 2:6232824/76‑1 (MQ=255) aGCATTATGCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑tt < 1:6579392/76‑1 (MQ=255) gCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt < 1:1911524/76‑1 (MQ=255) cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑tttt < 2:416786/76‑1 (MQ=255) cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑tttt < 2:2813930/76‑1 (MQ=255) ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑tttttt < 2:4065793/76‑1 (MQ=255) tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttttttt < 2:6745141/76‑1 (MQ=255) tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttttttt < 1:1556093/76‑1 (MQ=255) attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑tttttttt > 2:7338693/1‑75 (MQ=255) attCAACATACGCGCCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑tttttttt < 1:806924/76‑2 (MQ=255) tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttttttttca > 2:2390506/1‑73 (MQ=255) cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGt < 1:3633462/76‑1 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTg < 2:6814858/76‑1 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTg > 2:5156811/1‑76 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTg > 1:3333794/1‑76 (MQ=255) aTACGCGTCCTGACTATAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTg < 2:3685460/76‑1 (MQ=255) tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGa > 2:4504076/1‑76 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGaa > 1:5528076/1‑76 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGaa > 2:4712744/1‑76 (MQ=255) cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCCCCTTGAAAAAACTACATTTTTTTTTCATCGTGaa < 1:5300280/76‑1 (MQ=255) cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATg < 2:7197741/76‑1 (MQ=255) tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGa < 1:3517124/76‑1 (MQ=255) tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGa > 1:915322/1‑76 (MQ=255) tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGa > 2:251416/1‑76 (MQ=255) tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGa < 2:5016958/76‑1 (MQ=255) tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGa < 2:856202/76‑1 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGAc < 1:1161619/76‑1 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGAc < 1:6312730/76‑1 (MQ=255) cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACa < 2:3165469/76‑1 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACag < 1:2985745/76‑1 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACag > 2:7276465/1‑76 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACag > 2:1322870/1‑76 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACag < 1:2409616/76‑1 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACag < 2:6469106/76‑1 (MQ=255) gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACaga < 2:7717950/76‑1 (MQ=255) gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACaga < 1:4622521/76‑1 (MQ=255) aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACagag > 2:5375187/1‑76 (MQ=255) cTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAgg < 2:6292145/76‑1 (MQ=255) tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGa < 1:1048999/76‑1 (MQ=255) tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGa < 1:3829041/76‑1 (MQ=255) tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGa > 2:5785776/1‑76 (MQ=255) gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGAt < 2:7335329/76‑1 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATa > 1:5375147/1‑76 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATa < 2:624157/76‑1 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATa > 2:5850087/1‑76 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATa > 1:6984611/1‑76 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATa < 1:6616786/76‑1 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATa < 2:2655981/76‑1 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATa < 2:4335861/76‑1 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATaa > 1:2599204/1‑76 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATaa > 1:3148234/1‑76 (MQ=255) tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTg < 2:4849785/76‑1 (MQ=255) tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTg < 1:1248349/76‑1 (MQ=255) agaACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGtt > 2:1010509/1‑76 (MQ=255) agaACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGtt > 1:7627707/1‑76 (MQ=255) agaACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGtt > 1:1997900/1‑76 (MQ=255) gaACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTc < 2:416120/76‑1 (MQ=255) aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCa < 2:6828420/76‑1 (MQ=255) aCGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 1:903404/76‑1 (MQ=255) gAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa < 2:6608150/76‑1 (MQ=255) gAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa < 2:3589352/76‑1 (MQ=255) aaTTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 1:6164344/76‑1 (MQ=255) aaTTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa > 1:5812289/1‑76 (MQ=255) aaTTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 1:4578753/76‑1 (MQ=255) aTTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaaa < 2:5613819/76‑2 (MQ=255) aTTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc < 2:2426240/76‑1 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg > 2:6849423/1‑76 (MQ=255) tAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa > 1:2423436/1‑76 (MQ=255) tAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa > 2:2810913/1‑76 (MQ=255) aCCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa < 1:4290979/76‑1 (MQ=255) aCCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa < 2:6424513/76‑1 (MQ=255) ccGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt < 1:769643/76‑1 (MQ=255) ccGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt < 1:806641/76‑1 (MQ=255) gCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcc > 2:6601886/1‑76 (MQ=255) cTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATccc > 2:29852/1‑76 (MQ=255) cTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATccc > 1:5562656/1‑76 (MQ=255) cTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATccc < 2:1649700/76‑1 (MQ=255) ttCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc < 2:230594/76‑1 (MQ=255) ttCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc < 1:6626205/76‑1 (MQ=255) tCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg > 1:2460483/1‑76 (MQ=255) tCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg < 1:4931887/76‑1 (MQ=255) cACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGc < 1:5993983/76‑1 (MQ=255) cACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGc > 1:1548543/1‑76 (MQ=255) aCCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCt < 1:1327548/76‑1 (MQ=255) ccTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg < 1:3399954/76‑1 (MQ=255) ccTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg > 1:6473806/1‑76 (MQ=255) ccTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg < 1:6372161/76‑1 (MQ=255) tGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:424193/1‑76 (MQ=255) gAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa < 1:3582513/76‑1 (MQ=255) aaaaaaCTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa > 2:4811514/1‑76 (MQ=255) aaaaaCTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa < 2:2083891/76‑1 (MQ=255) aaaaCTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg > 2:5612374/1‑76 (MQ=255) aaCTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg < 2:3910464/76‑1 (MQ=255) cTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 2:7493496/1‑76 (MQ=255) | ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |