| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 78526 = | 276 (1.130) | 3 (0.010) | 3/150 | 20.0 | 1.2% | coding (1578/1656 nt) | yabN | DNA‑binding transcriptional regulator |
| ? | REL606 | = 1373085 | 238 (0.980) | coding (628/843 nt) | ycjP | predicted sugar transporter subunit: membrane component of ABC superfamily | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 241 total aligned reads displayed.
CAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCACCTTACCGGTGGGCCTGAACG > REL606/1373010‑1373160 | aaaTTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGc > 2:3750135/1‑76 (MQ=255) aaTTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCg > 2:1312508/1‑76 (MQ=255) aTTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGt > 1:6558817/1‑76 (MQ=255) tATCTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATACGTGCTCGTCTACTGCTTTATGGTGGCGCgg > 2:5772440/1‑76 (MQ=255) aTCTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGa < 1:3964666/76‑1 (MQ=255) tCTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGaa < 1:904043/76‑1 (MQ=255) tCTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGaa < 1:2035338/76‑1 (MQ=255) cTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAAc > 1:48454/1‑76 (MQ=255) cTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAAc > 1:4587478/1‑76 (MQ=255) cTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAAc < 2:2685116/76‑1 (MQ=255) cTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAAc > 1:2843558/1‑76 (MQ=255) ttCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACg > 2:6381911/1‑76 (MQ=255) ttCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACg < 2:7052371/76‑1 (MQ=255) ttCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACg > 2:4338431/1‑76 (MQ=255) ttCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACg < 2:7306023/76‑1 (MQ=255) ttCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACg < 1:5366222/76‑1 (MQ=255) tCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTAGTCTACTGCTTTATGGTGGCGTGGACCgg > 2:6294835/1‑75 (MQ=255) gCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTa < 2:586058/76‑1 (MQ=255) cgtCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGCCTACTGCTTTATGGTGGCGTGGAACGACTAt < 2:2015500/74‑1 (MQ=255) cATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTAt < 2:5364811/76‑1 (MQ=255) aTCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATc < 2:5279061/76‑1 (MQ=255) tCACCGTGTCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCt < 2:1962095/76‑1 (MQ=255) tCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCt < 2:569145/76‑1 (MQ=255) tCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCt < 2:281838/76‑1 (MQ=255) tCACCGTGCCGTTGGCGATGTCCGGGCTAATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCt < 1:1432085/76‑1 (MQ=255) cACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTTCTTTATGGTGGCGTGGAACGACTATCTg < 2:4565127/76‑1 (MQ=255) cACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTg > 2:3628287/1‑76 (MQ=255) aCCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGt < 2:5195286/76‑1 (MQ=255) aCCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGt < 1:2063164/76‑1 (MQ=255) ccGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGtt < 2:3822102/76‑1 (MQ=255) ccGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGtt > 1:6631605/1‑76 (MQ=255) cGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGttt < 2:2777725/76‑1 (MQ=255) cGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGttt < 1:221265/76‑1 (MQ=255) cGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGttt < 2:1156324/76‑1 (MQ=255) cGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGtgt > 2:3129996/1‑74 (MQ=255) gTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTg > 1:4656004/1‑76 (MQ=255) gTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTg > 2:5927065/1‑76 (MQ=255) tGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGc > 1:1111243/1‑76 (MQ=255) gCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCg < 2:7589528/76‑1 (MQ=255) gCCGTGGTCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCg < 2:7615789/76‑1 (MQ=255) cGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTc > 1:6991640/1‑76 (MQ=255) gTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCg < 1:6125843/76‑1 (MQ=255) ttGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGa > 2:1468905/1‑76 (MQ=255) tGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGAt < 1:3711346/76‑1 (MQ=255) tGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGAt < 2:3436958/76‑1 (MQ=255) tGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGAt < 1:6213740/76‑1 (MQ=255) cGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGAtttt < 2:406244/76‑1 (MQ=255) cGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGAtttt > 1:3105650/1‑76 (MQ=255) gATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTc > 2:5441650/1‑76 (MQ=255) gATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTc > 1:3813735/1‑76 (MQ=255) aTGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTcc > 2:5768840/1‑76 (MQ=255) aTGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTcc > 1:7620869/1‑76 (MQ=255) aTGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTcc > 1:7459206/1‑76 (MQ=255) tGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTTct > 2:2938096/1‑76 (MQ=255) tGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCct < 1:4184505/76‑1 (MQ=255) tGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCct < 1:5833024/76‑1 (MQ=255) tCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCctct < 1:2453870/76‑1 (MQ=255) tCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCctct < 2:7465043/76‑1 (MQ=255) ccGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCtctc < 2:2399055/76‑1 (MQ=255) cGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTcc < 2:6737181/76‑1 (MQ=255) gggCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCa < 1:6790164/76‑1 (MQ=255) ggCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAg < 1:461775/76‑1 (MQ=255) gCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAgc > 2:5131924/1‑76 (MQ=255) cTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAgcg > 2:3354360/1‑76 (MQ=255) cTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAgcg > 1:3590877/1‑76 (MQ=255) cTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAgcg > 1:1192804/1‑76 (MQ=255) tGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAgcgc > 1:7425507/1‑76 (MQ=255) gATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGcc > 2:4253142/1‑76 (MQ=255) gATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGcc < 1:7034388/76‑1 (MQ=255) atatCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCa < 1:5295029/76‑1 (MQ=255) atatCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCa < 2:6162178/76‑1 (MQ=255) atatCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCa > 1:6046209/1‑76 (MQ=255) tatCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAg > 1:6303664/1‑76 (MQ=255) tatCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAg > 2:2288452/1‑76 (MQ=255) tatCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAg < 2:4875154/76‑1 (MQ=255) tatCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAg < 2:2595997/76‑1 (MQ=255) ccGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCaa < 2:1874428/76‑1 (MQ=255) tgtgtTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAAt > 2:2418689/2‑76 (MQ=255) tgtTCGTCTACTGCTTTGTGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAAttt > 1:5343962/1‑76 (MQ=255) gtTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTc > 1:1562097/1‑76 (MQ=255) ttCGTCTACTGCTTTATGGTGGGGTGGAACGACTATCTGTTTGCGTCGATTTTACTCTCCAGCGCCAGCAATTTcc > 2:611249/1‑75 (MQ=255) cGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCAcc > 1:345563/1‑76 (MQ=255) cGTATACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCAcc > 2:6875197/1‑76 (MQ=255) gTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCACCt > 1:5010543/1‑76 (MQ=255) gTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCACCt < 2:5807545/76‑1 (MQ=255) gTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCACCt < 1:2743486/76‑1 (MQ=255) tCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCACCtt > 1:807921/1‑76 (MQ=255) tCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCACCtt < 2:3513586/76‑1 (MQ=255) tCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCACCtt < 2:6096140/76‑1 (MQ=255) cTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCACCTTa < 2:2043552/76‑1 (MQ=255) cTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCACCTTa < 1:4061220/76‑1 (MQ=255) tACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCACCTTAc < 2:5543215/76‑1 (MQ=255) gCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCACCTTACCGGt > 1:2327808/1‑76 (MQ=255) tttATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCACCTTACCGGTgg < 2:4087096/76‑1 (MQ=255) ttATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCACCTTACCGGTggg > 1:7214822/1‑76 (MQ=255) tATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCACCTTACCGGTGGGc > 2:2096991/1‑76 (MQ=255) tggtggCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCACCTTACCGGTGGGCCt > 1:2559325/1‑76 (MQ=255) tggtggCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCACCTTACCGGTGGGCCt > 1:1693540/1‑76 (MQ=255) ggCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCACCTTACCGGTGGGCCTGAAc < 1:3190655/76‑1 (MQ=255) gCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCACCTTACCGGTGGGCCTGAAcg < 2:4708904/76‑1 (MQ=255) | CAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTATCTGTTTGCGTCGATTTTCCTCTCCAGCGCCAGCAATTTCACCTTACCGGTGGGCCTGAACG > REL606/1373010‑1373160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |