Predicted mutation
evidence seq id position mutation annotation gene description
RA REL606 3,613,023 A→C intergenic (‑84/+99) dctA ← / ← yhjK C4‑dicarboxylate transport protein/predicted diguanylate cyclase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*REL6063,613,0230AC100.0% 919.1 / NA 201intergenic (‑84/+99)dctA/yhjKC4‑dicarboxylate transport protein/predicted diguanylate cyclase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (85/116);  total (85/116)

Only 100 of 201 total aligned reads displayed.

TAGTAAAACCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAG‑CACTTTTT  >  REL606/3612951‑3613095
                                                                        |                                                                         
tAGTAAAACCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAAt                                                                        >  2:3661789/1‑76 (MQ=255)
 aGTAAAACCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATg                                                                       >  2:3411085/1‑76 (MQ=255)
 aGTAAAACCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATg                                                                       >  1:294977/1‑76 (MQ=255)
  gTAAAACCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGt                                                                      <  2:3870239/76‑1 (MQ=255)
  gTAAAACCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGt                                                                      <  1:2077446/76‑1 (MQ=255)
   tAAAACCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTa                                                                     <  1:7387439/76‑1 (MQ=255)
   tAAAACCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTa                                                                     <  1:5368081/76‑1 (MQ=255)
   tAAAACCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTa                                                                     <  2:4606506/76‑1 (MQ=255)
    aaaaCCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTAc                                                                    >  2:6505514/1‑76 (MQ=255)
     aaaCCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCATTGTAcc                                                                   >  1:3750363/1‑76 (MQ=255)
     aaaCCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTAcc                                                                   >  1:4663557/1‑76 (MQ=255)
     aaaCCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTAcc                                                                   >  1:2386034/1‑76 (MQ=255)
      aaCCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCt                                                                  <  1:7431590/76‑1 (MQ=255)
      aaCCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCt                                                                  >  2:4455164/1‑76 (MQ=255)
      aaCCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCt                                                                  <  1:1279124/76‑1 (MQ=255)
       aCCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTg                                                                 <  1:821748/76‑1 (MQ=255)
        ccACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTgg                                                                <  1:4020436/76‑1 (MQ=255)
         cacaGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGa                                                               <  2:760303/76‑1 (MQ=255)
         cacaGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGa                                                               >  2:7255469/1‑76 (MQ=255)
          acaGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGAt                                                              <  1:3149675/76‑1 (MQ=255)
           caGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATc                                                             >  1:1714429/1‑76 (MQ=255)
           caGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATc                                                             >  1:6933131/1‑76 (MQ=255)
           caGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATc                                                             <  2:1929026/76‑1 (MQ=255)
             gATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCAt                                                           <  2:3140765/76‑1 (MQ=255)
             gATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCAt                                                           <  2:756056/76‑1 (MQ=255)
             gATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCAt                                                           <  2:236622/76‑1 (MQ=255)
             gATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCAt                                                           <  2:1757334/76‑1 (MQ=255)
               tCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATaa                                                         <  2:4539167/76‑1 (MQ=255)
               tCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATaa                                                         <  1:2606072/76‑1 (MQ=255)
                cTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAAt                                                        >  2:1837149/1‑76 (MQ=255)
                cTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAAt                                                        <  2:1437478/76‑1 (MQ=255)
                cTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAAt                                                        >  1:6657190/1‑76 (MQ=255)
                cTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAAt                                                        >  1:1764883/1‑76 (MQ=255)
                cTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAAt                                                        <  1:7708853/76‑1 (MQ=255)
                 ttGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAAtt                                                       >  2:1016777/1‑76 (MQ=255)
                 ttGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAAtt                                                       <  2:5658946/76‑1 (MQ=255)
                  tGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTg                                                      <  1:6986816/76‑1 (MQ=255)
                  tGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTg                                                      >  1:4321976/1‑76 (MQ=255)
                   gTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGa                                                     <  1:4965468/76‑1 (MQ=255)
                   gTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGa                                                     >  1:6248778/1‑76 (MQ=255)
                    tAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGaa                                                    <  2:2953628/76‑1 (MQ=255)
                     aaGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGaaa                                                   >  2:4175424/1‑76 (MQ=255)
                     aaGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGaaa                                                   <  2:4214674/76‑1 (MQ=255)
                      aGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAAc                                                  >  1:2557878/1‑76 (MQ=255)
                      aGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAAc                                                  <  2:4366241/76‑1 (MQ=255)
                       ggTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACa                                                 <  1:6543989/76‑1 (MQ=255)
                       ggTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACa                                                 >  1:3039305/1‑76 (MQ=255)
                        gTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACaa                                                <  2:3307016/76‑1 (MQ=255)
                         ttATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACaaa                                               >  2:1219856/1‑76 (MQ=255)
                         ttATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACaaa                                               >  2:2623873/1‑76 (MQ=255)
                          tATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACaaaa                                              <  1:1967913/76‑1 (MQ=255)
                            tGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAg                                            <  2:2840600/76‑1 (MQ=255)
                            tGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAg                                            >  1:7296660/1‑76 (MQ=255)
                            tGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAg                                            >  1:5912462/1‑76 (MQ=255)
                             ggggTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAgg                                           >  1:1580018/1‑76 (MQ=255)
                             ggggTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAgg                                           <  2:3107952/76‑1 (MQ=255)
                             ggggTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAgg                                           >  2:5175680/1‑76 (MQ=255)
                               ggTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGtt                                         <  1:1022844/76‑1 (MQ=255)
                                gTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTa                                        <  1:5007050/76‑1 (MQ=255)
                                gTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTa                                        <  2:2530607/76‑1 (MQ=255)
                                 tACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTaa                                       >  2:503052/1‑76 (MQ=255)
                                  aCCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTaaa                                      >  1:716109/1‑76 (MQ=255)
                                  aCCTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTaaa                                      <  1:6616609/76‑1 (MQ=255)
                                   ccTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTaaaa                                     <  1:7864657/76‑1 (MQ=255)
                                    cTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTaaaaa                                    <  1:4732412/76‑1 (MQ=255)
                                    cTGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTaaaaa                                    >  2:5926454/1‑76 (MQ=255)
                                     tGCGGCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAg                                   <  1:6338387/76‑1 (MQ=255)
                                         gCCTTAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTg                               <  1:3689955/76‑1 (MQ=255)
                                            ttAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGc                            >  1:944618/1‑76 (MQ=255)
                                            ttAAAATAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGc                            >  2:4807896/1‑76 (MQ=255)
                                              aaaaTAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTg                          >  2:5479501/1‑76 (MQ=255)
                                              aaaaTAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTg                          <  2:2232468/76‑1 (MQ=255)
                                              aaaaTAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTg                          <  1:2212408/76‑1 (MQ=255)
                                               aaaTAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTgg                         >  1:2643095/1‑76 (MQ=255)
                                                 aTAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAGGTTTGAGCTGGCt                       >  1:1042788/1‑76 (MQ=255)
                                                 aTAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCt                       <  1:3322687/76‑1 (MQ=255)
                                                  tAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTc                      >  1:3626868/1‑76 (MQ=255)
                                                  tAACACCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTc                      <  1:5835003/76‑1 (MQ=255)
                                                    acacCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGc                    >  1:1908702/1‑76 (MQ=255)
                                                     cacCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGca                   <  1:3276599/76‑1 (MQ=255)
                                                      acCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGcac                  >  1:4208634/1‑76 (MQ=255)
                                                      acCCAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGcac                  >  1:4368305/1‑76 (MQ=255)
                                                       cccAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGcaca                 >  1:4552804/1‑76 (MQ=255)
                                                       cccAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGcaca                 >  1:6310029/1‑76 (MQ=255)
                                                        ccAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACaa                <  2:3841955/76‑1 (MQ=255)
                                                        ccAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACaa                >  1:6017392/1‑76 (MQ=255)
                                                        ccAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACaa                <  2:7053158/76‑1 (MQ=255)
                                                        ccAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACaa                >  2:6916603/1‑76 (MQ=255)
                                                         cAGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACaaa               >  2:7136494/1‑76 (MQ=255)
                                                          aGACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAAc              >  2:6337119/1‑76 (MQ=255)
                                                           gACAACATCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAAcc             <  2:1128915/76‑1 (MQ=255)
                                                            acaacaTCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCa            >  1:2255361/1‑76 (MQ=255)
                                                             caacaTCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAg           <  1:5504230/76‑1 (MQ=255)
                                                             caacaTCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAg           <  2:3675888/76‑1 (MQ=255)
                                                              aacaTCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAG‑c         <  1:5816719/76‑1 (MQ=255)
                                                              aacaTCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAG‑c         <  2:469166/76‑1 (MQ=255)
                                                               acaTCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAG‑Ca        <  1:419444/76‑1 (MQ=255)
                                                                  tCACAGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAG‑CACtt     >  1:3532330/1‑76 (MQ=255)
                                                                   cacaGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAG‑TTGAGGGTGCTCGCCCAAACCCGCCACttt    >  1:6691450/1‑76 (MQ=255)
                                                                     caGCAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAG‑CACttttt  <  2:4934921/76‑1 (MQ=255)
                                                                        |                                                                         
TAGTAAAACCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAG‑CACTTTTT  >  REL606/3612951‑3613095

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑