New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 2042596	126 (0.580)	4 (0.020)	4/136	20.6	3.0%	coding (225/1428 nt)	wzx	O antigen translocase (Wzx)
	?	REL606	= 2042873	148 (0.760)					coding (494/546 nt)	rmlC	dTDP‑4‑dehydrorhamnose 3,5‑epimerase (RmlC)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATTAAATATAAATACTGTCGAATAATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2042515‑2042596 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataatctCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACTAGCCA  <  REL606/2042873‑2042799                                                                                                                                                               AATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATTAAATATAAATACTGTCGAA                                                                                   >  1:3498740/1‑76  ATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATTAAATATAAATACTGTCGAAT                                                                                  >  1:6536540/1‑76   TATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATTAAATATAAATACTGTCGAATA                                                                                 <  2:931336/76‑1   TATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATTAAATATAAATACTGTCGAATA                                                                                 <  2:886272/76‑1   TATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATTAAATATAAATACTGTCGAATA                                                                                 >  2:1018583/1‑76    ATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATTAAATATAAATACTGTCGAATAA                                                                                >  1:2232133/1‑76    ATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATTAAATATAAATACTGTCGAATAA                                                                                <  1:28016/76‑1    ATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATTAAATATAAATACTGTCGAATAA                                                                                <  1:4420988/76‑1      AAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATTAAATATAAATACTGTCGAATAATC                                                                              >  1:1936447/1‑76      AAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATTAAATATAAATACTGTCGAATAATC                                                                              >  1:432356/1‑76      AAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATTAAATATAAATACTGTCGAATAATC                                                                              <  1:5323059/76‑1                                                    AATATTAAATATAAATACTGTCGAATAATCTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGA                                >  2:4011232/1‑76                                                       ATTAAATATAAATACTGTCGAATAATCTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAG                             >  2:2427817/1‑76                                                              ATAAATACTGTCGAATAATCTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATT                      >  2:6447858/1‑76                                                                      TGTCGAATAATCTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATA              >  2:5977452/1‑76                                                                            ATAATCTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAAC        >  2:6966061/1‑76                                                                            ATAATCTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAAC        >  1:5962691/1‑76                                                                            ATAATCTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAAC        >  2:2103184/1‑76                                                                            ATAATCTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAAC        >  2:3324986/1‑76                                                                             TAATCTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACT       >  2:6563767/1‑76                                                                             TAATCTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACT       >  2:2533790/1‑76                                                                              AATCTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACTA      >  2:952615/1‑76                                                                              AATCTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACTA      <  1:5433470/76‑1                                                                              AATCTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACTA      >  2:296937/1‑76                                                                              AATCTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACTA      >  2:3508374/1‑76                                                                              AATCTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACTA      >  2:4736301/1‑76                                                                               ATCTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACTAG     <  1:6084768/76‑1                                                                               ATCTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACTAG     >  2:4882958/1‑76                                                                               ATCTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACTAG     >  2:4469098/1‑76                                                                               ATCTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACTAG     >  2:3990866/1‑76                                                                                TCTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACTAGC    >  2:4223941/1‑76                                                                                 CTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACTAGCC   >  2:4187596/1‑76                                                                                 CTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACTAGCC   >  1:1434402/1‑76                                                                                 CTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACTAGCC   >  1:6201840/1‑76                                                                                 CTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACTAGCC   >  1:4342532/1‑76                                                                                 CTCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACTAGCC   >  1:606155/1‑76                                                                                  TCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACTAGCCA  >  1:4872537/1‑76                                                                                  TCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACTAGCCA  <  1:3400626/76‑1                                                                                                                                                               AATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATTAAATATAAATACTGTCGAATAATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2042515‑2042596 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataatctCTGAGAAAGACATGAAACAACCATCATTCAGAGAACTTTTTGAGAAAGTTTAATTGATGAATAACAAACTAGCCA  <  REL606/2042873‑2042799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.