| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2036917 | 132 (0.610) | 6 (0.030) | 6/140 | 19.4 | 5.1% | coding (42/1113 nt) | wbbC | putative glycosyltransferase WbbC |
| ? | REL606 | = 2037192 | 99 (0.490) | coding (939/1176 nt) | wzy | O antigen polymerase (Wzy) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 113 total aligned reads displayed.
TTTAGATAGCATTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAATATATCTGGCAAGCAAA > REL606/2037117‑2037267 | tttAGATAGCATTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATa > 1:4526595/1‑76 (MQ=255)tttAGATAGCATTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATa > 1:1569771/1‑76 (MQ=255) ttAGATAGCATTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATaa > 2:6737934/1‑76 (MQ=255) ttAGATAGCATTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATaa > 1:3832434/1‑76 (MQ=255) tAGATAGCATTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATaaa < 1:4100074/76‑1 (MQ=255) tAGATAGCATTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATaaa < 1:6033482/76‑1 (MQ=255) aGATAGCATTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATaaaa < 1:5008321/76‑1 (MQ=255) gATAGCATTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATaaaaa > 1:5025521/1‑76 (MQ=255) gATAGCATTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATaaaaa < 1:4225149/76‑1 (MQ=255) gATAGCATTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATaaaaa < 2:2038780/76‑1 (MQ=255) aTAGCATTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAAt > 1:492606/1‑76 (MQ=255) aTAGCATTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAAt > 1:2595547/1‑76 (MQ=255) tAGCATTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATc > 1:2522612/1‑76 (MQ=255) aGCATTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAAtat < 2:4578454/76‑3 (MQ=255) aGCATTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATcc < 2:1331118/76‑1 (MQ=255) aGCATTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATcc < 2:3484006/76‑1 (MQ=255) gCATTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATcca < 1:3792906/76‑1 (MQ=255) gCATTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATcca < 2:2299761/76‑1 (MQ=255) aTTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATccaac > 1:3287141/1‑76 (MQ=255) aTTATAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATccaac > 2:1609141/1‑76 (MQ=255) ttGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATccaacc > 2:4383895/1‑76 (MQ=255) ttGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATccaacc < 1:2511782/76‑1 (MQ=255) ttGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATccaacc < 2:5557130/76‑1 (MQ=255) tGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATccaacca < 1:2744233/76‑1 (MQ=255) tGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATccaacca > 1:1332010/1‑76 (MQ=255) tGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATccaacca < 1:989131/76‑1 (MQ=255) tAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAAt > 1:4911861/1‑76 (MQ=255) aaaTAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAAtt < 2:3862651/76‑1 (MQ=255) aaaTAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAAtt < 2:6201195/76‑1 (MQ=255) aaTAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTa < 2:6519098/76‑1 (MQ=255) aTAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTaa < 1:6362967/76‑1 (MQ=255) tAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAAc > 1:2001098/1‑76 (MQ=255) tAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAAc < 1:1746184/76‑1 (MQ=255) aGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACg > 1:4521132/1‑76 (MQ=255) aGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACg < 2:2625437/76‑1 (MQ=255) aGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACg < 1:1168872/76‑1 (MQ=255) acacAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGa > 2:1575202/1‑76 (MQ=255) acaGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGAtt > 2:3109219/1‑76 (MQ=255) cAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTcaca > 2:1475603/1‑76 (MQ=255) cAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTcaca > 1:1031793/1‑76 (MQ=255) aaaCAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACAtt < 2:2651331/76‑1 (MQ=255) aaaCAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACAtt < 2:1975399/76‑1 (MQ=255) acaacCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTcc < 2:3727134/76‑1 (MQ=255) acaacCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTcc < 1:1522167/76‑1 (MQ=255) acaacCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTcc < 2:1583122/76‑1 (MQ=255) aacCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCAt > 1:3896619/1‑76 (MQ=255) aacCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCAt > 2:3894842/1‑76 (MQ=255) aacCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCAt < 1:1957928/76‑1 (MQ=255) aacCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCAt < 1:1677587/76‑1 (MQ=255) acCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATg < 2:1588116/76‑1 (MQ=255) cccATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGa < 1:5968472/76‑1 (MQ=255) ccATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAg > 1:494698/1‑76 (MQ=255) cATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGc < 2:5466684/76‑1 (MQ=255) cATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGc < 1:1213537/76‑1 (MQ=255) atgatgGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTAt < 2:6876514/76‑1 (MQ=255) atgatgGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTAt < 1:3456662/76‑1 (MQ=255) atgatgGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTAt < 1:7806/76‑1 (MQ=255) atgGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCa < 2:6542863/76‑1 (MQ=255) atgGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCa < 1:2734722/76‑1 (MQ=255) gggTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCaga > 2:6206861/1‑76 (MQ=255) gggTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCaga > 2:4829069/1‑76 (MQ=255) gggTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCaga < 2:417681/76‑1 (MQ=255) ggTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCagag < 2:5847285/76‑1 (MQ=255) ggTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCagag < 1:3071607/76‑1 (MQ=255) gTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAgaga < 1:5373488/76‑1 (MQ=255) gTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAgaga < 1:6185672/76‑1 (MQ=255) tAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGAt < 1:6955066/76‑1 (MQ=255) tAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGAt < 2:2071484/76‑1 (MQ=255) tAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGAt < 1:4806686/76‑1 (MQ=255) aGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATg > 1:1460604/1‑76 (MQ=255) aGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATg < 2:1534084/76‑1 (MQ=255) gAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATgg < 1:6195322/76‑1 (MQ=255) aaCGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGga < 1:1090545/76‑1 (MQ=255) aaCGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGga > 1:6337186/1‑76 (MQ=255) aCGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGgag < 2:1947282/76‑1 (MQ=255) aCGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGgag < 1:6323576/76‑1 (MQ=255) aCGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGgag < 1:6585255/76‑1 (MQ=255) aCGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGgag > 1:2914533/1‑76 (MQ=255) cGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGgaga > 1:1249126/1‑76 (MQ=255) gTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGaa > 2:1482330/1‑76 (MQ=255) tataAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGaaa < 2:1204358/76‑1 (MQ=255) ataAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAat < 1:1482801/76‑1 (MQ=255) taAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAata < 1:3087721/76‑1 (MQ=255) aaaTCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAatat > 1:1368521/1‑76 (MQ=255) aaTCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAatata > 2:259789/1‑76 (MQ=255) aaTCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAatata < 2:2365959/76‑1 (MQ=255) aaTCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAatata < 2:1250112/76‑1 (MQ=255) aTCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAatatat > 2:3139219/1‑76 (MQ=255) aTTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAATATATCTg < 2:4217706/76‑1 (MQ=255) aTTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAATATATCTg < 2:4935490/76‑1 (MQ=255) aTTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAATATATCTg < 2:245244/76‑1 (MQ=255) ttttGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAATATATCTgg < 2:6824394/76‑1 (MQ=255) ttttGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAATATATCTgg > 2:5564417/1‑76 (MQ=255) tGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAATATATCTGgcaa < 2:3287141/76‑1 (MQ=255) aaTAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAATATATCTGgcaagc < 2:2277253/76‑1 (MQ=255) aTAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAATATATCTGgcaagca < 2:147921/76‑1 (MQ=255) aTAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAATATATCTGgcaagca < 2:5326959/76‑1 (MQ=255) tAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAATATATCTGgcaagcaa < 2:5685472/76‑1 (MQ=255) tAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAATATATCTGgcaagcaa < 1:2090808/76‑1 (MQ=255) aaaaaTCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAATATATCTGGCAAGCaaa < 2:5185447/76‑1 (MQ=255) | TTTAGATAGCATTGTAAATAGAAAACACAGCAAAACAACCCATATGATGGGTAGAACGTATAAATCATTTTGAATAAAAATCCAACCAATTAACGATGGATTCACATTCCATGAGCTATCCAGAGATGGAGAAATATATCTGGCAAGCAAA > REL606/2037117‑2037267 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |