Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | REL606 | 2,164,658 | A→T | I395N (ATC→AAC) | yehU ← | predicted sensory kinase in two‑component system with YehT |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 2,164,658 | 0 | A | T | 91.6% | 479.7 / NA | 132 | I395N (ATC→AAC) | yehU | predicted sensory kinase in two‑component system with YehT |
Reads supporting (aligned to +/- strand): ref base A (1/0); major base T (22/98); minor base G (11/0); total (34/98) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.10e-08 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 185 total aligned reads displayed.
CCGCTTTAAGTTTTTGCGGAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGATCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTGAAGCAGTTTGATT > REL606/2164585‑2164729 | ccGCTTTAAGTTTTTGCGGAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGGTc > 1:1835302/1‑76 (MQ=255) cGCTTTAAGTTTTTGCGGAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCa < 1:4784064/76‑1 (MQ=255) cTTTAAGTTTTTGCGGAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCAcc < 2:4747350/76‑1 (MQ=255) ttAAGTTTTTGCGGAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGc < 2:3596028/76‑1 (MQ=255) ttAAGTTTTTGCGGAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGc < 2:5591273/76‑1 (MQ=255) aaGTTTTTGCGGAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCtt < 2:5984251/76‑1 (MQ=255) aaGTTTTTGCGGAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGGTCACCGCtt > 1:2803027/1‑76 (MQ=255) aGTTTTTGCGGAAAAAAGTGGAAAGATCCTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCttt < 1:5089440/76‑1 (MQ=255) aGTTTTTGCGGAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCttt < 1:1258586/76‑1 (MQ=255) gTTTTTGCGGAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTa < 2:5410285/76‑1 (MQ=255) gTTTTTGCGGAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTa < 2:2760160/76‑1 (MQ=255) gTTTTTGCGGAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGGTCACCGCTTTa > 1:1545373/1‑76 (MQ=255) tttttGCGGAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTaa < 2:1897441/76‑1 (MQ=255) tttttGCGGAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTaa < 2:3924492/76‑1 (MQ=255) ttttGCGGAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTGACCGCTTTTAt > 2:5487431/1‑76 (MQ=255) ttttGCGGAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGGTTACCGCCTTTAt > 1:4179468/1‑76 (MQ=255) ttttGCGGAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGGTCACCGCTTTTAt > 1:3644305/1‑76 (MQ=255) tGCGGAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGGTCACCGCCTTAATggg > 1:3041954/1‑75 (MQ=255) gCGGAAAAAAGTGGAAAGATGCTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGgtg < 2:1410945/76‑1 (MQ=255) ggAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGtt < 2:6508722/76‑1 (MQ=255) ggAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCCCTTTAATGGTGtt > 1:3295163/1‑76 (MQ=255) gAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTa < 1:3582009/76‑1 (MQ=255) aaaaaGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTTATGGTGTTAAg > 1:6907781/1‑76 (MQ=255) aaaaaGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAg < 2:1692577/76‑1 (MQ=255) aaaaGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGGTGAACCCTTTAAATGGGTTaaag > 2:1481000/1‑74 (MQ=255) aaaGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAgcg < 1:6796646/76‑1 (MQ=255) aaGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGGTCACCCCTTTTATTGTGTTTAgggc > 2:2932034/1‑76 (MQ=255) aaGGGGAAAGATACTGCACCATCTGGCGGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAgcgc < 1:2659965/76‑1 (MQ=255) aGTGGAAAGATACTGCCCCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCa < 2:5137946/76‑1 (MQ=255) gTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑t < 1:3901760/76‑1 (MQ=255) tGGAAAGATACTGCCCCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑tt < 1:1106994/76‑1 (MQ=255) tGGAAAGATACTGCCCCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑tt < 1:3766639/76‑1 (MQ=255) ggAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTa < 1:3393048/76‑1 (MQ=255) ggAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGGTCACCGCTTTTATTGGGTTAAAGGCA‑TTa > 1:5428856/1‑76 (MQ=255) gAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTaa < 1:4478919/76‑1 (MQ=255) gAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTaa < 1:6930650/76‑1 (MQ=255) gAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGGTCACCGCCTTTATTGGGTTAAACGCA‑CTaa > 2:4322591/1‑76 (MQ=255) aaaGATCCTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTaaa < 2:3586608/76‑1 (MQ=255) aaaGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTTACAGCTTTTATTGTGTTATGGGCA‑TTaaa > 2:5243131/1‑76 (MQ=255) aaGATAGTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑AGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAAc < 2:1001573/76‑1 (MQ=255) aGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGGTTCCCCCTTTAATGGTGTTTAGCGCA‑TTAAACa > 2:3373290/1‑76 (MQ=255) gATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGGGCCCCGCCTTTATGGGGGTAAACGCA‑GTAAACaa > 2:6743655/1‑76 (MQ=255) aTACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGG‑GGGTCTCCGATTTTATGGTGGTTAGCGGG‑TTTAACaaa > 1:2061020/1‑76 (MQ=255) tACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGCGGGTTCACCCCTTTATGGGGGTTAACGGCT‑TTAAACaaa > 1:6426910/1‑76 (MQ=255) aCTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGGTCACCGCTTTAATGGGGTTTAGCGCA‑TTAaaaaaaaa > 2:865125/1‑76 (MQ=255) gCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATg < 2:1938381/76‑1 (MQ=255) gCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGGTTACCCCTTTTATTGGGTTAAGCGCA‑TTAAAAAAAAAATg > 1:164228/1‑76 (MQ=255) cACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGGTTCCCCCCTTTATGGTGTTTAGCGCA‑TTAAAAAAAAAAAGa > 2:5536135/1‑76 (MQ=255) aCCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGCTCACCCCTTTTATGGTGGTAAGCGCA‑TTAAACAAAAAATGAg > 1:2580210/1‑76 (MQ=255) ccAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAgg < 1:557180/76‑1 (MQ=255) aGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTTATGGTGGTAAGCGCA‑TTAAACAAAAAATGAgggt > 2:535363/1‑74 (MQ=255) aGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGAt > 1:1269535/1‑76 (MQ=255) aGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGAt < 1:528195/76‑1 (MQ=255) ctggctggCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTc < 1:614408/76‑1 (MQ=255) ctggctggCCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTc < 2:2071752/76‑1 (MQ=255) ctggctggCCTGTTCGCTGTCGCGGC‑GGGTTACCGCTTTTATTGTGTTAAACGGATTTAAACAAAAAATAAGGAtt > 2:6231444/1‑76 (MQ=255) ctggctggCCTGTTCGCTGTCGCGGC‑GGGTTACCGCCTTTATGGGGTTTAACGCC‑TTAAAAAAAAAAAGAGGGTTc > 2:5363427/1‑76 (MQ=255) tggctggcCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCa < 2:4525424/76‑1 (MQ=255) tggctggcCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCa > 1:6743090/1‑76 (MQ=255) tggctggcCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCa < 2:3249329/76‑1 (MQ=255) tggctggcCTGTTCGCTGTCGCGGC‑GGGTCACCCCCTTAATTGTGTTTAACGCC‑TTTAACACAAAAAAAGGAttta > 2:3477259/1‑74 (MQ=255) ggctggcCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTTATGGTGTTTAGCGCA‑TTTAACAAAAAATGAGGGTTCAc > 1:3625398/1‑76 (MQ=255) ggctggcCTGTTCGCTGTCGCGGC‑GGATCACCGCTTTAATGGTGTTCAGCGCA‑TTAAACAAAAAATGAGGATTCAc > 2:4390644/1‑76 (MQ=255) gctggcCTGTTCGCTGTCGCGGC‑GGGTTACCGCTTTTATGGTGTTAAGCGCC‑TTAAACAAAAAATGAGGATTCAcc > 2:1237476/1‑76 (MQ=255) gctggcCTGTTCGCTGTCGCGGC‑GGGTCACCGCTTTTATGGGGTTAAGCGCA‑TTAAAAAAAAAATGAGGATTccac > 2:4803787/1‑73 (MQ=255) ctggcCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCt < 2:5916757/76‑1 (MQ=255) ctggcCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCt < 2:2758652/76‑1 (MQ=255) ctggcCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCt < 2:2832590/76‑1 (MQ=255) tggcCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTg < 2:626633/76‑1 (MQ=255) tggcCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTg < 1:4420406/76‑1 (MQ=255) tggcCTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTg < 1:1620026/76‑1 (MQ=255) tggcCTGTTCGCTGTCGCGGC‑GGTTCACCCCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTg > 1:4257004/1‑76 (MQ=255) tggcCTGTTCGCTGTCGCGGC‑GGGTCACCGCCTTAATGGTGTTAAGCGGA‑TTAAACAAAAAATGAGGATTCACCTg > 2:297556/1‑76 (MQ=255) ccTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGc > 1:2553403/1‑76 (MQ=255) cTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCg > 1:2124339/1‑76 (MQ=255) cTGTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCg < 2:4170442/76‑1 (MQ=255) gTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTg < 1:2439904/76‑1 (MQ=255) gTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTg < 2:2536052/76‑1 (MQ=255) gTTCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTg < 2:2279063/76‑1 (MQ=255) gTTCGCTGTCGCGGC‑GGGTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTg > 1:2849341/1‑76 (MQ=255) ttCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTGa > 1:3365817/1‑76 (MQ=255) ttCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTGa < 2:2576626/76‑1 (MQ=255) ttCGCTGTCGCGGC‑GGGTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTGa > 2:6869234/1‑76 (MQ=255) tCGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTGaa < 2:5745287/76‑1 (MQ=255) cGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTTGGCGTGAAg < 2:1674399/76‑1 (MQ=255) cGCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTGAAg > 1:1791964/1‑76 (MQ=255) gCTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTGAAGc < 1:1725782/76‑1 (MQ=255) cTGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTGAAGCa > 1:4786693/1‑76 (MQ=255) tGTCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTGAAGCAg > 2:1700233/1‑76 (MQ=255) tGTCGCGGC‑GGGTTACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTGAAGCAg > 2:306187/1‑76 (MQ=255) gTCGCGGC‑GGGTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTGAAGCAGt > 2:6440188/1‑76 (MQ=255) tCGCGGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTGAAGCAGtt < 1:6456363/76‑1 (MQ=255) cgcgGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTGAAGCAGttt < 1:4064547/76‑1 (MQ=255) cgcgGC‑GGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTGAAGCAGttt < 1:3711820/76‑1 (MQ=255) cgcgGC‑GGGTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTGAAGCAGttt > 2:4628346/1‑76 (MQ=255) gcggc‑gGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTGAAGCAGTTTg < 1:2205445/76‑1 (MQ=255) gcggc‑gGTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTGAAGCAGTTTg < 2:1839132/76‑1 (MQ=255) gcggc‑gGGTCACCCCCTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCAACTGGGCGTGAAGCAGGTTg > 2:4683076/1‑76 (MQ=255) cggc‑ggTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTGAAGCAGTTTGa < 2:4136335/76‑1 (MQ=255) ggc‑ggTTCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTGAAGCAGTTTGAt > 2:328724/1‑76 (MQ=255) | CCGCTTTAAGTTTTTGCGGAAAAAAGTGGAAAGATACTGCACCAGCTGGCTGGCCTGTTCGCTGTCGCGGC‑GGATCACCGCTTTAATGGTGTTAAGCGCA‑TTAAACAAAAAATGAGGATTCACCTGGGCGTGAAGCAGTTTGATT > REL606/2164585‑2164729 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |