| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3737289 = | 165 (1.040) | 4 (0.030) | 3/138 | 17.9 | 3.0% | coding (538/1254 nt) | waaL | Lipid A‑core, surface polymer ligase |
| ? | REL606 | 3737758 = | 106 (0.730) | coding (69/1254 nt) | waaL | Lipid A‑core, surface polymer ligase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 117 total aligned reads displayed.
ATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATATTTT > REL606/3737683‑3737833 | aTACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCaaa < 1:3093734/76‑1 (MQ=255)aTACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCaaa < 2:4768919/76‑1 (MQ=255) tACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAg > 1:3210611/1‑76 (MQ=255) aCAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGa < 1:4326128/76‑1 (MQ=255) aCAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGa > 2:2467973/1‑76 (MQ=255) cAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGaa > 2:2876533/1‑76 (MQ=255) cAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGaa < 1:2219723/76‑1 (MQ=255) aaTGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGaaa < 1:933487/76‑1 (MQ=255) aaTGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGaaa > 2:2726575/1‑76 (MQ=255) aTGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGaaaa > 1:625215/1‑76 (MQ=255) aTGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGaaaa < 1:4005875/76‑1 (MQ=255) aTGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGaaaa < 1:238288/76‑1 (MQ=255) aTGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGaaaa < 1:2174419/76‑1 (MQ=255) tGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGaaaaa < 1:2340828/76‑1 (MQ=255) gCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGaaaaaa > 1:4846911/1‑76 (MQ=255) cAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAAt > 1:4746598/1‑76 (MQ=255) cAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAAt < 1:1820221/76‑1 (MQ=255) aGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATa > 2:5085165/1‑76 (MQ=255) gATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATAc < 2:4503122/76‑1 (MQ=255) atatAATTCCAGCTGCATGAAGAAACTTTGTGGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACa > 2:3970335/1‑76 (MQ=255) taATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACataa < 2:1552350/76‑1 (MQ=255) aaTTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACataat < 2:2462784/76‑1 (MQ=255) aaTTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACataat < 2:2648150/76‑1 (MQ=255) aaTTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACataat > 1:3974019/1‑76 (MQ=255) aTTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACataata > 1:1702683/1‑76 (MQ=255) aTTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACataata < 1:89860/76‑1 (MQ=255) ccAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATga < 1:4421767/76‑1 (MQ=255) cAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATgag > 2:767472/1‑76 (MQ=255) cAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATgag < 2:4866174/76‑1 (MQ=255) gCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGaa < 2:3768851/76‑1 (MQ=255) gCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTa > 1:3936621/1‑76 (MQ=255) gCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTa < 2:714169/76‑1 (MQ=255) aTGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTaaa < 2:255258/76‑1 (MQ=255) tGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAg > 1:1593694/1‑76 (MQ=255) tGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAg > 1:1410799/1‑76 (MQ=255) tGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAg > 2:2711502/1‑76 (MQ=255) gaagaaACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATGATATGAGAATTAAAGa < 2:1356604/76‑1 (MQ=255) gaagaaACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGa < 1:732922/76‑1 (MQ=255) aagaaACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGAc > 2:731715/1‑76 (MQ=255) aagaaACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGAc < 1:287936/76‑1 (MQ=255) agaaACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACt > 2:193392/1‑76 (MQ=255) agaaACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACt > 1:426043/1‑76 (MQ=255) aaaCTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACttt > 2:2761186/1‑76 (MQ=255) aCTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTtat < 2:3889884/76‑1 (MQ=255) aCTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTtat < 1:4535048/76‑1 (MQ=255) aCTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTtat > 2:1031057/1‑76 (MQ=255) cTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTtata > 2:414499/1‑76 (MQ=255) cTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTtata < 2:3250849/76‑1 (MQ=255) ttgttgCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATAcc < 1:1170328/76‑1 (MQ=255) tgttgCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCa > 2:300970/1‑76 (MQ=255) gttgCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCaa < 2:3591853/76‑2 (MQ=255) gttgCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAg < 1:4372963/76‑1 (MQ=255) gttgCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAg < 1:116076/76‑1 (MQ=255) tgCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaa < 1:1311763/76‑1 (MQ=255) cAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaatt < 2:828611/76‑1 (MQ=255) cAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaatt > 1:3829248/1‑76 (MQ=255) aaCATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaatta < 1:1340989/76‑1 (MQ=255) aaCATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaatta > 1:468576/1‑76 (MQ=255) aaCATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaatta > 2:4079314/1‑76 (MQ=255) aCATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaattaa < 1:3774467/76‑1 (MQ=255) aCATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaattaa < 1:4762393/76‑1 (MQ=255) catcatCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaattaat < 1:4151063/76‑1 (MQ=255) catcatCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaattaat > 1:3870933/1‑76 (MQ=255) catcatCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaattaat > 2:445963/1‑76 (MQ=255) catcatCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaattaat < 1:2144478/76‑1 (MQ=255) atcatcCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaattaatt > 2:4280663/1‑76 (MQ=255) atcatcCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaattaatt > 1:945200/1‑76 (MQ=255) tcatcCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAAttt < 2:4861067/76‑1 (MQ=255) tcatcCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAAttt < 2:3087654/76‑1 (MQ=255) catcCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTc < 1:4635772/76‑1 (MQ=255) atcCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCa > 1:576392/1‑76 (MQ=255) atcCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCa > 2:1805716/1‑76 (MQ=255) tcCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCAt < 1:2422563/76‑1 (MQ=255) cccATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCAtt > 2:3905467/1‑76 (MQ=255) cccATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCAtt > 1:1256468/1‑76 (MQ=255) ccATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTc > 1:611929/1‑76 (MQ=255) cATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTcc < 2:1314211/76‑1 (MQ=255) cATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTcc < 1:3131148/76‑1 (MQ=255) tAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCcaa < 2:1447014/76‑1 (MQ=255) tAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCcaa < 2:5120594/76‑1 (MQ=255) tAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCcaa > 1:585848/1‑76 (MQ=255) aaaGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCcaac > 2:3040577/1‑76 (MQ=255) aaaGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCcaac > 1:5095420/1‑76 (MQ=255) aGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCcaacaa < 1:1470882/76‑1 (MQ=255) aCAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACaaaa < 2:2746116/76‑1 (MQ=255) cAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAAt > 2:4031238/1‑76 (MQ=255) cAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAAt > 1:3239705/1‑76 (MQ=255) aaaGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATg > 1:2709789/1‑76 (MQ=255) aaGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGa < 1:637021/76‑1 (MQ=255) aGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGAc > 1:4719069/1‑76 (MQ=255) aGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGAc > 2:2006699/1‑76 (MQ=255) gTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACa < 2:1607266/76‑1 (MQ=255) catcaAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACata < 1:3238431/76‑1 (MQ=255) atcaAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACatat < 1:263222/76‑1 (MQ=255) tcaAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACatata < 2:4370245/76‑1 (MQ=255) tcaAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACatata < 2:3094424/76‑1 (MQ=255) caAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACatatat < 2:4975989/76‑1 (MQ=255) aaaGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATAtt > 1:905738/1‑76 (MQ=255) aaaGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATAtt > 2:4537334/1‑76 (MQ=255) aGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATAtttt < 2:4398177/76‑1 (MQ=255) | ATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATATTTT > REL606/3737683‑3737833 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |