Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 3,472,700 | 0 | C | G | 44.1% | 44.7 / 75.0 | 68 | A290G (GCG→GGG) | yhgA | predicted transposase |
Reads supporting (aligned to +/- strand): ref base C (27/11); new base G (0/30); total (27/41) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.92e-10 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 117 total aligned reads displayed.
TAATGCTTGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGTTGCCTACACCCTCTGCTTCAACGCCACCAGCAGGTGACAA > REL606/3472625‑3472775 | taatGCTTGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTgc‑ggc > 2:2696481/1‑76 (MQ=255) taatGCTTGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTgc‑ggc > 1:2124256/1‑76 (MQ=255) taatGCTTGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTgc‑ggc < 1:175519/76‑1 (MQ=255) taatGCTTGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTgc‑ggc > 1:1690782/1‑76 (MQ=255) taatGCTTGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTgc‑ggc < 1:4038591/76‑1 (MQ=255) taatGCTTGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTgc‑ggc > 2:337171/1‑76 (MQ=255) taatGCTTGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTgc‑ggc < 2:4921893/76‑1 (MQ=255) aatGCTTGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTgc‑ggcg < 2:3908570/76‑1 (MQ=255) atGCTTGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGa < 1:2359144/76‑1 (MQ=255) tGCTTGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAg < 1:1489820/76‑1 (MQ=255) tGCTTGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAg < 1:4352311/76‑1 (MQ=255) gCTTGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGc > 1:995635/1‑76 (MQ=255) cTTGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAggc > 1:1493677/1‑74 (MQ=255) cTTGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAggc > 2:4872046/1‑74 (MQ=255) cTTGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGcc < 1:1329370/76‑1 (MQ=255) cTTGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGcc < 1:3266329/76‑1 (MQ=255) ttGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCa > 2:768426/1‑76 (MQ=255) ttGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCa < 1:1834417/76‑1 (MQ=255) ttGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCa > 1:1755976/1‑76 (MQ=255) tGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGGCAg > 1:1668321/1‑76 (MQ=255) tGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAg < 2:4930401/76‑1 (MQ=255) tGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAg < 2:1236408/76‑1 (MQ=255) aacccGGACTCCC‑TCTTAAAGACATCATGCGCTTCCCG‑GGGGTGCAAGAAGAAGGGTGGGCGGG‑GGGGAGCCAGTa < 2:752404/73‑1 (MQ=255) aaTCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGCGGGCGACCCAga > 1:105894/1‑75 (MQ=255) tCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGG‑GGCGAGCCAGTaaa > 2:1654405/1‑76 (MQ=255) tCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTaaa > 2:4981012/1‑76 (MQ=255) ccgggAGCCCC‑TCTTACAGACATCATGCGCTTTCCG‑GGGGTGTAAGAAGAAGAGTGGGCGGG‑GGGGAGCCAGTaaa < 2:1331325/73‑1 (MQ=255) ccGGGGTCCCTTCTTACAGACATCATGCGCTTTGCG‑GGGGTGTAAGAAGAAGGGTGGGCGGG‑GGGGAGCCAGTaaa < 2:2968145/76‑1 (MQ=255) ccGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGGGAGCCAGTaagt > 2:4514666/1‑74 (MQ=255) ccGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAAt > 1:1634381/1‑76 (MQ=255) cGGCGTCCC‑ACTTACAGACAT‑AAGCGGTTTGCCGGGGGTGTGAGAAGAAGAGTTGGTGGG‑GGGGAGCCAGTAAAtt < 2:2301509/76‑1 (MQ=255) cGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGGaaaat > 1:4664738/1‑74 (MQ=255) cGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑‑GGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCCGGAAAttt > 1:1132751/1‑76 (MQ=255) ggAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGGCAGTAAAttt > 1:1500807/1‑76 (MQ=255) ggAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAAttt > 1:2535678/1‑76 (MQ=255) agcccc‑TCTTCCAGACATCTTGCTCTTTCCG‑GGGGTGTAAGAAAAAGAGTGGGCTGC‑GGGGAGCCAGTAAATTTCt < 2:2762022/73‑1 (MQ=255) aGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAATTTCt > 1:3595340/1‑76 (MQ=255) ccccc‑TCTAAAAGACATCATGCGCTTTGCG‑GGGGTGTAAGAAGAAGGGTGGGCGGC‑GGGGAGCCAGTAAATTTCTg < 2:3841397/74‑1 (MQ=255) tCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGACAGTAAATTTCttt > 1:1654563/1‑74 (MQ=255) cc‑TCTTACAGACTTCATGCCCTTTGCC‑GGGGTGTCAGAAGAAGAGTTGGCTGG‑GGGGAGCCAGTAAATTTCTGtct < 2:4628207/76‑1 (MQ=255) cc‑TCTAACAGACATCATGCGCTTTGCG‑GGGGTGTAAGAAGAAGAGTTGGCTGC‑GGGGAGCCAGTAAATTTCTGtct < 2:3288708/76‑1 (MQ=255) c‑tctTACAGACATCATGCGCTTTACG‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGGGAGCCAGTAAATTTCTGtctc < 2:1344927/76‑1 (MQ=255) c‑tctTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAATTTCTGtctc > 1:4204407/1‑76 (MQ=255) c‑tctTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAATTTCTGtctc > 1:3806458/1‑76 (MQ=255) tctTACAGACATCATGCTCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGG‑GGCGAGCCAGTAAATTTCTGTCTCg < 2:3782398/76‑1 (MQ=255) tctTACAGACATCATGCGCTTTACG‑GGGGTGTAAGAAGAAGGGTGGGCTGG‑GGGGAGCCAGTAAATTTCTGTCTCg < 1:2477962/76‑1 (MQ=255) tctTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGGGGCCGGAAAATTCTGtctcc > 1:235344/1‑75 (MQ=255) tctTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCCGGAAATTTCTGtctcc > 2:429835/1‑75 (MQ=255) tctTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAATTTCTGtttcc > 1:4715361/1‑75 (MQ=255) tctTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAATTTCTGTCTCg > 2:2200807/1‑76 (MQ=255) tctTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAAATTCTTGCTCg > 2:2388639/1‑76 (MQ=255) ttACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGAAAATTTCTGTTTCGcc > 1:3948391/1‑76 (MQ=255) agcacacCATGCCCTTTGCG‑GGGGTGTAAAAAAAGGGGGTGGCGGG‑GGGGAGCCAGTAAATTTCTGTCTCGCCAtt < 1:442637/73‑1 (MQ=255) aaaaCAGCATGCTTTTTCCG‑GGGGTGTAAGAAGAGGGTTGGGCGGG‑GGGGAGCCAGTAAATTTCTGTCTCGCCAtt < 1:4226368/73‑1 (MQ=255) aGACATCATGCGTTTTGCG‑GGGGTGTAAGAAGAAGGGTGGGCGGC‑GGGGAGCCAGTAAATTTCTGTCTCGCCAttt < 1:4538744/76‑1 (MQ=255) aGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAATTTCTGTCTCGCCCttt > 1:454118/1‑76 (MQ=255) gACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGACAGTAAATTTTTGTCTCGCCActtt > 1:4384965/1‑75 (MQ=255) aCATCATGCTCTTTGCG‑GGGGTCTGAAAAGAAGAGTGGGCGGG‑GGGGAGCCAGTAAATTTCTGTCTCGCCATTTCa < 1:4179519/76‑1 (MQ=255) aCATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGCGGCCGTAAATTTCTGTCTCGCCCtttta > 2:614938/1‑74 (MQ=255) aCATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAATTTCTGTCTCGCCCTTTCa > 2:4161374/1‑76 (MQ=255) catcatGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGGAAATTTCTGTCTCGCCACTTCaa > 1:3322423/1‑76 (MQ=255) catcagGCGTTTTACG‑GGGGTGAAAGAAGAAGAGTGGGCGGC‑GGGGAGCCAGTAAATTTCTGTCTCGCCATTTCaa < 1:329059/76‑1 (MQ=255) atcctGCGCTTTGCC‑GGGGTGTAAGAGGAAGGGTGGGCGGC‑GGGGAGCCAGTAAATTTCTGTCTCGCCATTTCaaa < 2:4415378/76‑1 (MQ=255) atcatGCGCTTTCCG‑GGGGTGTAAGAAGAAGAGTTGGCGGC‑GGGGAGCCAGTAAATTTCTGTCTCGCCATTTCaaa < 2:3408318/76‑1 (MQ=255) cgcTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAATTTCTGTCTCGCCATTTCTAAAGTTGc > 2:76080/1‑76 (MQ=255) cTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAATTTCTGTCTCCCCCTTTCAAAAATTGCCt > 1:3421243/1‑76 (MQ=255) cTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGACAGGAAATTTCTGTCTCGCCATTTCAAAAGTTGCCt > 2:188098/1‑76 (MQ=255) tttACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGGCAGTAAATTTCTGTCTCGCCCTTTCAAAAGTTGGCtc > 2:2949109/1‑75 (MQ=255) ttACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCCGTAAATTTCTGTCTCCCCATTTCTAAAATTGCCttc > 2:4141116/1‑74 (MQ=255) tACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGCGCCAGAGAAATTTTCTGTCGCCCTTTTTAAAATTGTCTgca > 1:4217569/1‑76 (MQ=255) tACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAATTTTCTTCTCGCCCCTTTAAAAATTGCCcaca > 1:1422568/1‑76 (MQ=255) aCC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGGGCCAGTAAATTTCTGTCTCGCCCTTTCAAAAGTTGCCTacac > 1:1895641/1‑76 (MQ=255) cgggggggTCAGAAGAAGGGTTGGCTGG‑GGGGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGTTGCCTACAcc < 1:1178940/74‑1 (MQ=255) cgggggTGAAAGAAGAAGGGTGGGCTTG‑TGGGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGTTGCCTACAcc < 2:4031661/74‑1 (MQ=255) c‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAATTTTTGTCTCGCCATTTCCAAAGTTGCCTACAccc > 2:1090259/1‑76 (MQ=255) ggggTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGGTGCCTACccccc > 1:2049279/1‑75 (MQ=255) ggTGTCAGAAGAAGAGTGGGCGGG‑GGGGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGTTGCCTACACCctct < 2:2386379/76‑1 (MQ=255) gtgtCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGTTGCCTACACCCCCTg > 1:3629932/1‑76 (MQ=255) gtgtAAGAAGACGAGGGGGCTGC‑GGGGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGTTGCCTACACCCTCTg < 2:4087752/76‑1 (MQ=255) gtgtAAGAAAGAGAGTGGGCGGC‑GGGGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGTTGCCTACACCCTCTg < 2:461650/76‑1 (MQ=255) tgtCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAATTTTTGTCTCGCCCTTTCAAAAGTTGCCTACACCCTCTGc > 1:3129033/1‑76 (MQ=255) tCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAATTTCTGTCTCGCCCTTTCAAAAATTGCCTACACCCCCTGCtt > 2:2818714/1‑76 (MQ=255) gaagaagaagaGGTGGCGGC‑GGGGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGTTGCCTACACCCTCTGCtt < 2:3502840/74‑1 (MQ=255) cAGAAGAAGGGTGGGCTGC‑GGGGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGTTGCCTACACCCTCTGCTTc < 2:123660/76‑1 (MQ=255) cAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGTTGCCTACACCCTCTGCTTc > 2:4812048/1‑76 (MQ=255) cAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAATTGCCTACACCCTCTGCTTc > 2:2706521/1‑76 (MQ=255) aagaagaaggGTGGGCTGC‑GGGGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGTTGCCTACACCCTCTGCTTc < 2:2321001/75‑1 (MQ=255) agaagagggGTGGGCGGG‑GGGGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGTTGCCTACACCCTCTGCTTCa < 1:1587194/76‑1 (MQ=255) agaagaagaGTTGGCTGC‑GGCGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGTTGCCTACACCCTCTGCTTCa > 1:662543/1‑76 (MQ=255) aagaggaGTGGGCTGG‑GGGGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGTTGCCTACACCCTCTGCTTCAAc < 2:3944354/76‑1 (MQ=255) aagaGTTGGCTGA‑TGCGAGCCCGAAAAATTCTGACTCGCCTTTTCCAAAAGTGCCGAAACCCTCTGCTTCAACAcc > 2:5073338/1‑76 (MQ=255) ggTTGGCGGG‑GGGGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGTTGCCTACACCCTCTGCTTCAACGccacc < 1:4485928/75‑1 (MQ=255) agTTGGCTGC‑GGCGAGCCAGTAAATTTTTGTCTCGCCATTTCAAAAGTTGCCTACACCCTCTGCTTCAACGccacc > 1:2395636/1‑76 (MQ=255) tgggCTGG‑GGGGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGTTGCCTACACCCTCTGCTTCAACGCCACcag < 2:2361282/74‑1 (MQ=255) tGGCTGG‑GGCGAGCCCGTAAATTTCTTTCTCGCCATTTCAAAAGTTGCCTACACCCTCTGCTTCAACGCCCCccgc > 2:1031834/1‑76 (MQ=255) tGGCTGC‑GGCGAGGCAGTAAATTTTTGTCTCGCCATTTCAAAAGTTGCCTACACCCTCCGCTTCACAGCCACcagc > 2:646755/1‑76 (MQ=255) ggCTGG‑GGCGAGCCAGTAAAATTTTGTCTCGCCATTTTAAAAGTTGGCTACACCCTCTGCTTCAACGccaccaccc > 2:4274450/1‑73 (MQ=255) ggCTGC‑GGCGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGTTGCCTACACCCTCTGCTTCAACGCCACcagca > 1:705335/1‑76 (MQ=255) gCTGG‑GGGGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGTTGCCTACACCCTCTGCTTCAACGCCACcagcag < 1:4060234/76‑1 (MQ=255) cgAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGTTGCCTACACCCTCTGCTTCAACGCCACCAGCAGGCGACaa > 1:1285945/1‑76 (MQ=255) | TAATGCTTGAATCCGGAGTCCC‑TCTTACAGACATCATGCGCTTTACC‑GGGGTGTCAGAAGAAGAGTTGGCTGC‑GGCGAGCCAGTAAATTTCTGTCTCGCCATTTCAAAAGTTGCCTACACCCTCTGCTTCAACGCCACCAGCAGGTGACAA > REL606/3472625‑3472775 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |