| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 1,689,712 | (C)6→7 | intergenic (+360/‑251) | nth → / → ydgR | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/putative tripeptide transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,689,706 | 1 | . | C | 91.5% | 177.9 / 8.9 | 47 | intergenic (+354/‑257) | nth/ydgR | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/putative tripeptide transporter permease |
| Reads supporting (aligned to +/- strand): ref base . (3/1); new base C (26/17); total (29/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 | |||||||||||
TGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTT > REL606/1689631‑1689775 | tGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCa < 1:891289/76‑1 (MQ=255) ggCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑c < 1:1235307/76‑1 (MQ=255) gCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑cc < 2:575028/76‑1 (MQ=255) cTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑ccc > 2:59626/1‑76 (MQ=255) aGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTca < 1:1117385/76‑1 (MQ=255) aGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTca > 2:1213373/1‑76 (MQ=255) gAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTcag > 1:841452/1‑76 (MQ=255) gAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTcag > 1:369306/1‑76 (MQ=255) gAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTcag < 1:1420161/76‑1 (MQ=255) aaaCTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTcagt < 1:160916/76‑1 (MQ=255) aCTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTcagtgc > 2:1204661/1‑76 (MQ=255) tGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTcagtgcag > 1:125956/1‑76 (MQ=255) tGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTcagtgcag < 2:1222000/76‑1 (MQ=255) ggACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTcagtgcagt > 1:487893/1‑76 (MQ=255) gACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCACCA‑CCCCCCTCTCAGTGCAGTGa > 2:263935/1‑76 (MQ=255) aCTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGa > 1:1339366/1‑76 (MQ=255) aCTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGa < 1:1176501/76‑1 (MQ=255) cTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGaa > 2:927860/1‑76 (MQ=255) tATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCCTCTCAGTGCAGTGaaaa < 1:1045530/76‑1 (MQ=255) aTCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGaaaa < 1:167655/76‑1 (MQ=255) aTCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGaaaa > 1:431922/1‑76 (MQ=255) cACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATc > 1:1223583/1‑76 (MQ=255) aCTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCCCAGTGCAGCGAAAAAATCt > 2:465398/1‑76 (MQ=255) aGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGcc > 2:964093/1‑76 (MQ=255) aGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTAcc > 2:738978/1‑76 (MQ=255) tAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGttttt > 2:412150/1‑76 (MQ=255) tAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGttttt > 2:161992/1‑76 (MQ=255) tAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGttttt < 1:521780/76‑1 (MQ=255) aaaTAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGattttt > 2:1518781/1‑76 (MQ=255) aaTAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTg < 1:966407/76‑1 (MQ=255) gCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGaaaa < 2:1330244/76‑1 (MQ=255) gCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGaaaa > 1:1209672/1‑76 (MQ=255) cAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGaaaaa > 2:1539745/1‑76 (MQ=255) cAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGaaaaa > 2:351348/1‑76 (MQ=255) gAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAAtt < 1:637274/76‑1 (MQ=255) aaCATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAAttt < 1:205531/76‑1 (MQ=255) cATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTaa < 1:1255064/76‑1 (MQ=255) cATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTaa > 2:161144/1‑76 (MQ=255) tatCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACg > 1:1351876/1‑76 (MQ=255) tatCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACg < 2:434679/76‑1 (MQ=255) atCGCCGTTAAGCCATCACCCCCCCTCTCAGAGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGc > 1:743180/1‑76 (MQ=255) gCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTgg > 1:1384708/1‑76 (MQ=255) ccGTTAAGCCATCACCCCCCCTCTCAGTGCAGGGAAAAAATCTGCCGTTAAGTTTTTTGTAAAATTTAACGCTGGa > 1:284472/1‑76 (MQ=255) ccGTTAAGCCATCA‑CCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGAt > 2:920809/1‑76 (MQ=255) gTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATa < 1:694600/76‑1 (MQ=255) ttAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCAGTTACGTTTTTTGAAAAATTTAACGCTGGATaa < 1:386855/76‑1 (MQ=255) tAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAAc > 2:687618/1‑76 (MQ=255) tAAGCCATCA‑CCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACa > 2:1475577/1‑76 (MQ=255) aaGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACa < 1:1212139/76‑1 (MQ=255) aaGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACa > 1:1182153/1‑76 (MQ=255) ccATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACAttt < 2:625093/76‑1 (MQ=255) | TGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTT > REL606/1689631‑1689775 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |