| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,928,204 | A→G | intergenic (+72/‑13) | rhoL → / → rho | rho operon leader peptide/transcription termination factor Rho |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,928,204 | 0 | A | G | 100.0% | 90.4 / NA | 23 | intergenic (+72/‑13) | rhoL/rho | rho operon leader peptide/transcription termination factor Rho |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (12/11); total (12/11) | |||||||||||
GACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAA > REL606/3928131‑3928274 | gACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGGAc > 1:671326/1‑76 (MQ=255) tAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGGACTcaca > 2:582368/1‑76 (MQ=255) aaaCAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGGACTCacac > 2:339046/1‑76 (MQ=255) aaCAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGGACTCAcacc > 2:503703/1‑76 (MQ=255) aCAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGGACTCAcacca < 1:194614/76‑1 (MQ=255) cAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGGACTCAcaccac > 2:493777/1‑76 (MQ=255) gCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGGACTCACACCACTAt < 1:229557/76‑1 (MQ=255) gCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGGACTCACACCACTAt < 2:441608/76‑1 (MQ=255) aTGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGGACTCACACCACTATGa < 1:454949/76‑1 (MQ=255) gatgatCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGGACTCACACCACTATGAATc < 1:40132/76‑1 (MQ=255) gatCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGGACTCACACCACTATGAATCTTa < 2:126567/76‑1 (MQ=255) cTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGGACTCACACCACTATGAATCTTACCGa > 2:540427/1‑76 (MQ=255) cATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGGACTCACACCACTATGAATCTTACCGAATTa > 2:410478/1‑76 (MQ=255) cacaACATTAAGTTCGAGATTTACCCCAAGTTTAAGGACTCACACCACTATGAATCTTACCGAATTAAAGAATACg > 1:550749/1‑76 (MQ=255) aTTAAGTTCGAGATTTACCCCAAGTTTAAGGACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGtt > 2:520293/1‑76 (MQ=255) ttAAGTTCGAGATTTACCCCAAGTTTAAGGACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGttt > 1:201789/1‑76 (MQ=255) aGTTCGAGATTTACCCCAAGTTTAAGGACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTg < 2:363105/76‑1 (MQ=255) gagaTTTACCCCAAGTTTAAGGACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTg > 2:641015/1‑76 (MQ=255) ccAAGTTTAAGGACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCg < 2:51549/76‑1 (MQ=255) aGTTTAAGGACTCACACCACTATGAATCTTATCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCg < 1:557842/76‑1 (MQ=255) aGTTTAAGGACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCg < 1:352932/76‑1 (MQ=255) tttAAGGACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGaa < 1:133464/76‑1 (MQ=255) ttAAGGACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGaaa > 1:102750/1‑76 (MQ=255) | GACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAA > REL606/3928131‑3928274 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |