| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4582559 = | 47 (1.110) | 4 (0.110) | 4/128 | 4.8 | 8.8% | intergenic (+12/+37) | tsr/yjiZ | methyl‑accepting chemotaxis protein I, serine sensor receptor/predicted transporter |
| ? | REL606 | 4582589 = | 43 (1.190) | intergenic (+42/+7) | tsr/yjiZ | methyl‑accepting chemotaxis protein I, serine sensor receptor/predicted transporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACC > REL606/4582485‑4582632 | aCGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGGAAAt < 2:277726/76‑1 (MQ=255) ccAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATNGCCATGAAAATGcc < 1:2894/76‑1 (MQ=255) cAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGCAGAACTGGGAAACATTTTAATCGCCATGAAAATGccc < 1:1121787/76‑1 (MQ=255) aGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCg > 1:904080/1‑76 (MQ=255) cTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGAt > 2:985102/1‑76 (MQ=255) cgccgcGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAg < 1:1124533/76‑1 (MQ=255) cgccgcGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCAATGAAAATGCCCGATAAg < 1:567122/76‑1 (MQ=255) ccgcGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCa > 2:1127770/1‑76 (MQ=255) gcgTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCaaa < 1:839960/76‑1 (MQ=255) cgTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGTTAAGCaaaa < 2:957518/76‑1 (MQ=255) gTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAAt > 1:913350/1‑76 (MQ=255) gTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCa < 2:780775/76‑1 (MQ=255) ggCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATa > 2:541259/1‑76 (MQ=255) gCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATaa > 1:1052102/1‑76 (MQ=255) cAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAg > 1:311435/1‑76 (MQ=255) cAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAg > 1:51610/1‑76 (MQ=255) aTAGCTAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGgag > 1:87044/1‑76 (MQ=255) aTAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGgag < 2:1136086/76‑1 (MQ=255) aTAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGgag < 2:270138/76‑1 (MQ=255) aTAGCGAGGAAAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGgag < 1:292366/76‑1 (MQ=255) gCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGAtt < 2:98591/76‑1 (MQ=255) gCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGAtt < 1:764241/76‑1 (MQ=255) gaggagAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTaa > 1:471129/1‑76 (MQ=255) aggagAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAAt > 2:366508/1‑76 (MQ=255) gagaACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCt > 1:582580/1‑76 (MQ=255) agaACTGGGAANCANTTTAATCGCCAGGAAAATGCCCGATAAGCAAAATGTTATCGGACATAAGGACATTAATCtt < 2:209168/76‑1 (MQ=255) aaCTGGGAAACATTTTAATNGNCATGAAANTGCCCGATAAGCAGAATGTTANCGNGCATAAGGAGATTAATCTTTa < 2:196051/76‑1 (MQ=255) cTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACg > 2:814419/1‑76 (MQ=255) cTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACg < 1:326132/76‑1 (MQ=255) ggAACCATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTgg > 1:1250756/1‑76 (MQ=255) ggAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTgg > 2:1255189/1‑76 (MQ=255) ggAAACATTTTAATAGCCATGAAAATGCCCGATAAGCAACATGTTATCGGGCATCAGGAGATTCATCTTTCCGTgg > 1:1250749/1‑76 (MQ=255) gAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTggg < 1:327554/76‑1 (MQ=255) aaaCATATGAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGt > 1:1245591/1‑76 (MQ=255) cATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATNTTTACGTGGGTCGt > 1:1148648/1‑76 (MQ=255) cATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGt < 2:1132805/76‑1 (MQ=255) aTTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGtt < 2:859888/76‑1 (MQ=255) tttAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGa > 2:583427/1‑76 (MQ=255) ttAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGAt > 2:1256217/1‑76 (MQ=255) tAATCGCCATGAAAATGCCCGATAAGCAAGATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATc > 1:235585/1‑76 (MQ=255) tCGCCATGAAAATGCCCGATAAGCAAACTGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGc > 1:1184849/1‑76 (MQ=255) ccATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGa > 2:173754/1‑76 (MQ=255) cATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGAc < 2:983810/76‑1 (MQ=255) tGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGGCGa > 1:665756/1‑76 (MQ=255) tGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGa > 2:1125897/1‑76 (MQ=255) aaaaTGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAAc > 1:337086/1‑76 (MQ=255) aaaTGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAAcc > 2:1022821/1‑76 (MQ=255) | ACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACC > REL606/4582485‑4582632 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |