| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 40 (1.060) | 36/144 | 0.1 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 37 (0.980) | 31/144 | 0.3 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
CGAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772780‑2772924 | cGAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGGACACCCTGAACGGGGGGGGAAAAacc > 1:898534/1‑76 (MQ=37) aaaTTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGGACACCCTGAACGGTGGGGGAAAACCCCa > 2:481747/1‑76 (MQ=255) ttttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATaa < 1:143695/76‑1 (MQ=255) tttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAg < 2:579622/76‑1 (MQ=255) ttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCTCGAGGAACACCNTGAACGGTGGGGAAAAACCCCATAAgc < 1:1109547/76‑1 (MQ=255) tGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAgcg < 2:212866/76‑1 (MQ=255) tGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAgcg < 1:843191/76‑1 (MQ=255) gATTCATCGTGATGCCCAGCTTGTCCCCGCTGGCGCGGGGAACACCCTGAACGGTNGGGAAAAACCCCATAAgcgc < 1:62974/76‑1 (MQ=38) aTTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGGAAAACCCCATAAGCGCt > 2:957514/1‑76 (MQ=255) tCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAATTGCTaa < 1:1189951/76‑1 (MQ=255) tCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTaa < 1:209642/76‑1 (MQ=255) tCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTaa < 1:406139/76‑1 (MQ=255) aTCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACt < 1:1157040/76‑1 (MQ=255) cGTGATGACCGGTTTACCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTa < 1:414888/76‑1 (MQ=255) tgatgaCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAg < 1:642587/76‑1 (MQ=255) atgaCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAggg > 2:1195947/1‑76 (MQ=255) tgaCCGCTTCATCCCCGATGGCGCGGGGAACACCCTGAACGGTGGGGAACAACCCCATAAGNGCNAACTTAAgggg > 2:195510/1‑75 (MQ=38) cGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTtgtg < 2:656484/76‑1 (MQ=255) tATCCCCGGTGGCGCGGGGAACACCCTGAACGGTGCGGAAAAACCCTATAAGCGCTAACTTAATGGTTGTGGTAtt > 2:17951/1‑76 (MQ=37) aTCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa > 1:349508/1‑76 (MQ=255) aTCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa < 2:241649/76‑1 (MQ=255) ccccGCTGGCGCGGGGAACACCCTGAANGGTGGGGNNAAACCTCATAACCGCTCACTTAAGGGTTTTGATATTACg > 1:1246413/1‑76 (MQ=37) ccccGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACg < 1:944223/76‑1 (MQ=255) ccccGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACg < 2:715313/76‑1 (MQ=255) ccccGCTGGCGCGGGGAACACCCTGAACGGGGGGGGAAAACCCCATAAGCGCTAACTTAAGGGGTGTGGTATTaag > 2:711343/1‑74 (MQ=25) cccGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGc < 2:230161/76‑1 (MQ=255) cTGGCGGGGTGAACACCTCGAACGGTGGGGAAAAACCCCATAAGCGCTATCTTAAGGGTTGNGGNATTACGCCTGa > 2:193649/1‑76 (MQ=18) cTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa > 2:570065/1‑76 (MQ=255) cgGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt < 1:614528/76‑1 (MQ=255) aaCACCCTGAACGGTGGGGAAAAACCCNATNACNGCGAACTNAACGGTGGTGGTATTACGCCTGATATGATTTAAc < 1:1102108/76‑1 (MQ=18) acCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTg < 2:876625/76‑1 (MQ=255) acCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTg < 2:1224375/76‑1 (MQ=255) cccTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGc < 1:83378/76‑1 (MQ=255) gAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTCAACGTGCCGAt < 1:65865/76‑1 (MQ=255) aaCGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg > 2:529722/1‑76 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt < 2:220998/76‑1 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt > 2:944412/1‑76 (MQ=255) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa > 2:254164/1‑76 (MQ=40) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa < 1:201081/76‑1 (MQ=40) gggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTNTTACGCCTGATATGATTTAACGTGCCGATGAATTAct < 1:1234042/76‑1 (MQ=38) gAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct < 2:231594/76‑1 (MQ=34) aaaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACtctc > 2:640000/1‑76 (MQ=32) aaaaCCCCATAAGCGCTAACTTAAGNGTTGTGGTATTACGCCTGATANGATATAACGTGCCGATGAATTACTCTCa < 1:182345/76‑1 (MQ=11) aaaaCCCCATAAGCGCTAACTTAAGNGATGTGGTATTACGCCTGATGNGATATAACGTGCCGATGAATTACTCTCa < 1:182350/76‑1 (MQ=11) | CGAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772780‑2772924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |