| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893604–3894994 | 3901930 | 6937–8327 | 15 [12] | [0] 41 | [insJ‑5]–[yieO] | [insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3652533 | NA (NA) | 39 (1.020) | 33/146 | 0.2 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
TTGGGCATATGTTTGCGCGCGTAAAGAAGGCCTGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA > REL606/3901857‑3902005 | ctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacagg < 1:269840‑M2/2‑1 (MQ=255)ctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacagg < 1:453177‑M2/2‑1 (MQ=255) tgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGt > 2:428194‑M2/74‑76 (MQ=255) tgactccaattgaatagcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggn < 1:22335‑M2/3‑2 (MQ=255) gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGtt < 2:658545‑M2/4‑1 (MQ=255) actccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTg < 2:530400‑M2/5‑1 (MQ=255) actccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTg < 2:530382‑M2/5‑1 (MQ=255) actccaattgaatatcggaatcagacctataggcntcgtcttngantgnccaagtttatggggtcagtacaGGTTg > 1:1102819‑M2/72‑76 (MQ=255) attgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAgg > 2:1191924‑M2/66‑76 (MQ=255) attgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAgg < 1:627155‑M2/11‑1 (MQ=255) aatatcggaatcagacctatatgcctcntgtttaacagtccaactttttggggtcagtacaGGTTGCCCAGGTGAc > 1:1113901‑M2/62‑76 (MQ=255) cggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCa < 2:322471‑M2/20‑1 (MQ=255) aatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGGTGCCCAGGTGACCAGCAcgc > 2:275663‑M2/54‑76 (MQ=255) atcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCAcgcc < 1:548021‑M2/24‑1 (MQ=255) tcagacctatatgcgtcgtgtttaactgtcgaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCAcgccg < 1:28219‑M2/25‑1 (MQ=255) cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCAcgccgc > 1:1026939‑M2/51‑76 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCa > 2:729599‑M2/49‑76 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAg < 1:593141‑M2/30‑1 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAg < 2:326891‑M2/30‑1 (MQ=255) ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGa < 1:491524‑M2/31‑1 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAc > 2:296430‑M2/44‑76 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGc > 2:478252‑M2/39‑76 (MQ=255) cgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTa < 2:672789‑M2/41‑1 (MQ=255) tgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGAGCACCACGCCGCCAAGAACGGGGCCtaac > 1:190739‑M2/34‑75 (MQ=255) tgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTaaa > 1:975838‑M2/34‑76 (MQ=255) tgtttaacngtcgaactttttgggctctgtacaTAGTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTaaa < 2:208140‑M2/43‑1 (MQ=255) taactgaccgactttttcaggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGACNGGNGCCTAAAATTg > 2:195878‑M2/30‑76 (MQ=255) ctgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGcc < 2:108364‑M2/50‑1 (MQ=255) gtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGcccc < 2:381935‑M2/52‑1 (MQ=255) tccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCcca < 2:926265‑M2/53‑1 (MQ=255) ccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCccac < 1:861274‑M2/54‑1 (MQ=255) ccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCccac < 2:523605‑M2/54‑1 (MQ=255) caactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCccacc < 2:710842‑M2/55‑1 (MQ=255) tttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGAc < 2:636246‑M2/59‑1 (MQ=255) ttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCg < 2:875131‑M2/62‑1 (MQ=255) ggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGc < 2:470085‑M2/64‑1 (MQ=255) agtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCg < 2:466583‑M2/70‑1 (MQ=255) agtacaGGTTGCCCAGGTGACCAGCACGACGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCg > 2:908648‑M2/7‑76 (MQ=255) acaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACa < 1:428381‑M2/73‑1 (MQ=255) caGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACaa < 1:723178‑M2/74‑1 (MQ=255) aGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGAcaac > 2:625261‑M2/2‑75 (MQ=255) | TTGGGCATATGTTTGCGCGCGTAAAGAAGGCCTGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA > REL606/3901857‑3902005 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |