| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893616–3894994 | 3901930 | 6937–8315 | 8 [5] | [0] 20 | [insJ‑5]–[yieO] | [insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3652533 | NA (NA) | 18 (0.750) | 18/146 | 0.4 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
TGGGCATATGTTTGCGCGCGTAAAGAAGGCCTGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAA > REL606/3901858‑3902006 | tgactccaattgaatatcggaatcagacctatatgcctcgtgtttaattgtccaactttttggggtcagtacaGGt < 2:763780‑M2/3‑1 (MQ=255)tgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGt > 1:360449‑M2/74‑76 (MQ=255) caattgaatatcggaatcagacctntatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCa > 2:131797‑M2/68‑76 (MQ=255) ttgaatatcggaatcagccctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGt > 2:173969‑M2/65‑76 (MQ=255) tgaatatctgaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTg < 2:419729‑M2/13‑1 (MQ=255) tatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCa > 2:599145‑M2/60‑76 (MQ=255) ctatatgcctagtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGa > 1:111532‑M2/46‑76 (MQ=255) tgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACggg > 1:780229‑M2/41‑76 (MQ=255) tttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAt > 2:195744‑M2/32‑76 (MQ=255) ccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCccac > 1:393132‑M2/23‑76 (MQ=255) aactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACAGGGCCTAAAATTGGCCccacca < 2:485619‑M2/56‑1 (MQ=255) tttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGAccc > 2:372846‑M2/16‑76 (MQ=255) gggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCa < 1:697581‑M2/65‑1 (MQ=255) gtcagtacaGGTTGCCCAGGTCACCAGTACGCCGGCAAGAACGGGGCCTAAAATTGGCCCCACCAGACACGGCATg < 2:704975‑M2/67‑1 (MQ=255) tcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCANACCCGGTATgg < 1:118289‑M2/68‑1 (MQ=255) agtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCg > 2:433243‑M2/7‑76 (MQ=255) tacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGAc > 1:386970‑M2/5‑76 (MQ=255) gcaGGTTGCCTAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCGGAGCCGGCATGGCGACa < 1:114937‑M2/73‑1 (MQ=255) acaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACa < 2:340387‑M2/73‑1 (MQ=255) ggTTGCCCAGGTGACCAGCATGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACaaaa < 2:663486/76‑1 (MQ=255) | TGGGCATATGTTTGCGCGCGTAAAGAAGGCCTGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAA > REL606/3901858‑3902006 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |