| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 48 (1.120) | 39/144 | 0.1 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 46 (1.080) | 39/144 | 0.1 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
ATTTTGATTCATCGTGATGACCGGTTTAT‑‑CCCCGCTGGC‑‑GCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772784‑2772924 | aTTTTGATTCATCGTGATGACCGGTTTAC‑‑CCCCGCTGGC‑‑GCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATa < 1:584413/76‑1 (MQ=255) tttGATTCATCGTGATGACCGGTTTAT‑‑CCCCGCTGGC‑‑GCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAg < 1:1201633/76‑1 (MQ=255) gATTCATCGTGATGACCGGTTTATCCCCCCCCGGGC‑‑GGGGGGGACCCCCCAACGGGGGGGGAAAAACCCCaaaacc > 1:358592/1‑74 (MQ=255) cATCGTGATGACCGGTTTAT‑‑CCCCCCCGGCGGGGGGGGGAAACCCAAACGGGGGGGGAAAAACCACAAAAgcggac > 1:1087616/1‑73 (MQ=255) aTCGTGATGACCGGTTTAT‑‑CCCCGCTGGC‑‑GCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAAca < 2:1417439/76‑2 (MQ=255) aTCGTGATGACCGGTTTAT‑‑CCCCGCTGGC‑‑GCGGGGAACACCCTGAACGGGGGGGGAAAAACCCATAAGCGCTAACt > 2:417941/1‑76 (MQ=37) cGTGATGACCGGTTTAT‑‑CCCCGCTGGC‑‑GCGGGGAACACCCTGAACGGTGGGGGAAAACCCCATAACCGCTAACTTa > 2:1099358/1‑76 (MQ=255) cGTGATGACCGGTTTAT‑‑CCCCGCTGGC‑‑GCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTa < 1:839089/76‑1 (MQ=255) gTGATGACCGGTTTAT‑‑CCCCGCTGGC‑‑GCGGGGAACACCCTGAACGGTGNGGAAAAACCCCATAAGCGCTAACTTaa < 1:1422539/76‑1 (MQ=255) tgatgaCCGGTTTAT‑‑CCCCGCTGGC‑‑GCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAg < 2:1020921/76‑1 (MQ=255) gTTTAC‑‑CCCCGCTGGC‑‑GCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGt < 1:335523/76‑1 (MQ=255) tttAT‑‑CCCCGCTGGC‑‑GCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTa > 2:1315289/1‑76 (MQ=255) ttAT‑‑CCCCGCTGGC‑‑GCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 1:272924/76‑1 (MQ=255) ttAT‑‑CCCCGCTGGC‑‑GCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt > 1:540383/1‑76 (MQ=255) tAT‑‑CCCCACTGGC‑‑GCGGGGAACACCCTGATCGGTGGGGAAAAACCCCATACGTGCTAACGTAAGGGTTGTGGTAtt < 1:71556/76‑1 (MQ=37) aT‑‑CCCCGCTGGC‑‑GCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa < 1:1007872/76‑1 (MQ=255) t‑‑CCCCGCTGGC‑‑GCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAc < 1:863290/76‑1 (MQ=255) cGCTGGC‑‑GCGGGGAACACCCTGAACCGTNGGGAAAAACCACCTAAGCTCTAACTTAAGGGTTGTGGTATTACGCCt < 1:119167/76‑1 (MQ=25) gCTGGC‑‑GCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg < 2:1051897/76‑1 (MQ=255) cTGGC‑‑GCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa < 1:1088417/76‑1 (MQ=255) cTGGC‑‑GCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa > 2:168088/1‑76 (MQ=255) c‑‑gcgGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg < 1:1379900/76‑1 (MQ=255) c‑‑gcgGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg < 1:307674/76‑1 (MQ=255) ggggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt < 2:860336/76‑1 (MQ=255) ggggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt > 2:291482/1‑76 (MQ=255) gggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 1:393462/76‑1 (MQ=255) ggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa < 1:1192714/76‑1 (MQ=255) gAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa < 1:640587/76‑1 (MQ=255) acacCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACg < 1:1169864/76‑1 (MQ=255) acCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTg < 2:1109668/76‑1 (MQ=255) acCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTg < 2:900707/76‑1 (MQ=255) acCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTg < 2:1114188/76‑1 (MQ=255) aaCGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg > 1:600315/1‑76 (MQ=255) aCGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 2:895466/76‑1 (MQ=255) cGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa < 1:1144201/76‑1 (MQ=255) gggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAct < 2:1015296/76‑1 (MQ=38) gggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAct < 2:1015279/76‑1 (MQ=38) ggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActc < 2:495907/76‑1 (MQ=35) gAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct < 2:936764/76‑1 (MQ=34) aaaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACtctc > 2:712081/1‑76 (MQ=32) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGGATTACTCTCa < 1:1319291/76‑1 (MQ=14) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGANTTACTCTCa < 1:30008/76‑1 (MQ=14) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCNGATATGATTTAACGTGCCGATGAATTACTCTCa < 2:1200137/76‑1 (MQ=14) | ATTTTGATTCATCGTGATGACCGGTTTAT‑‑CCCCGCTGGC‑‑GCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772784‑2772924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |