| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,875,625 | 1 | . | T | 94.3% | 114.9 / 0.5 | 35 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base T (17/16); total (18/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.17e-01 | |||||||||||
TAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TT‑TTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCG > REL606/3875551‑3875693 | tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t < 2:682673/76‑1 (MQ=255) cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑tt > 2:1205971/1‑76 (MQ=255) attattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑ttt > 1:439260/1‑76 (MQ=255) attattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATGTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑ttt < 2:1320062/76‑1 (MQ=255) tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑ttt‑tttca < 2:355449/76‑4 (MQ=255) aaCATACGCGTCCTGACTGTAATTTGAGAACGAATTTACACCGCATCATCTTGAAAATACTACAGTT‑CTT‑TTCATc > 1:1388014/1‑76 (MQ=255) tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTCTTT‑TTCATCGTGa > 1:1063050/1‑76 (MQ=255) cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATg < 1:106661/76‑1 (MQ=255) cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATg > 1:367676/1‑76 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCNTCGTGAAATGCAc > 1:201687/1‑76 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGAc < 1:902467/76‑1 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGAc > 1:1076259/1‑76 (MQ=255) gACTGTAATTTGAGACCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGACaga < 1:850221/76‑1 (MQ=255) gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGACaga > 1:468080/1‑76 (MQ=255) gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGAt < 2:640109/76‑1 (MQ=255) gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGAt < 1:940219/76‑1 (MQ=255) gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGAt > 2:1211259/1‑76 (MQ=255) aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCACGGTGAAATGGACAGAGGATaaa > 2:570841/1‑76 (MQ=255) tttGAGAACGAATTTAAACCGCTTCACATTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGTATAAAt > 1:1513838/1‑76 (MQ=255) tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGATAAATTg < 1:1239513/76‑1 (MQ=255) agaACGAATTTAAACCGCTTCACCTTGAAAAGACTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGATAAATTGtt < 2:249954/76‑1 (MQ=255) gAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa < 1:1091397/76‑1 (MQ=255) gAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa > 2:1413551/1‑76 (MQ=255) ttAAACCGCTTCCNCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGATATGGACAGAGGATAAATTGTTCAATAACgg < 2:1392715/76‑1 (MQ=255) tAAACCGCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa > 2:950951/1‑76 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGNCAGAGGATAAATTGTTCAATAACGGAt < 1:1531897/76‑1 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGNCAGAGGATAAATTGTTCAATAACGGAt < 1:1531909/76‑1 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 1:1037861/1‑76 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt < 1:409014/76‑1 (MQ=255) ccGCTTCTCCTTGAAAAAACTACA‑TT‑TTTCTTCATCGTGAAATGGACAGAGGATAAATCGTTCAATAACGGATTAt < 1:76801/76‑1 (MQ=255) ccGCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt < 1:944354/76‑1 (MQ=255) gCTTCACCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcc > 1:211945/1‑76 (MQ=255) cACCTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGc > 2:75950/1‑76 (MQ=255) ccTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg < 2:769677/76‑1 (MQ=255) cTTGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa > 1:154398/1‑76 (MQ=255) tGAAAAAACTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:273696/1‑76 (MQ=255) aaaaaaCTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa > 1:750061/1‑76 (MQ=255) aaaaaaCTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa > 1:407856/1‑76 (MQ=255) aaaaCTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 1:549881/76‑1 (MQ=255) aaaaCTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg > 2:956036/1‑76 (MQ=255) aaCTACATTT‑TTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg < 2:523218/76‑1 (MQ=255) | TAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TT‑TTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCG > REL606/3875551‑3875693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |