| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2651895 | NA (NA) | 39 (0.850) | 30/144 | 0.5 | NA | noncoding (670/1542 nt) | rrsG | 16S ribosomal RNA |
| ? | REL606 | = 2774196 | NA (NA) | noncoding (1343/1343 nt) | IS186 | repeat region | |||||
GTCCAGGGGGCCGCCTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCccc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2651821‑2651895‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCT < REL606/2774196‑2774124 GTCCAGGGGGCCGCCTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCC < 2:1037337/76‑1GTCCAGGGGGCCGCCTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCC > 1:800823/1‑76GTCCAGGGGGCCGCCTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCC < 2:427943/76‑1GTCCAGGGGGCCGCCTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCC > 2:816562/1‑76GTCCAGGGGGCCGCCTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCC < 2:560765/76‑1 tgCAGGGGGCCGCCTTCGCCACCGGTATTCCTCCAGATCTCTACGCAGTTCACCGCTGCCCCTGGAATTCTCCCCC < 2:1251424/74‑1 TCCAGGGGGCCGCCTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCC < 1:1336192/76‑1 TCCAGGGGGCCGCCTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCC < 1:724992/76‑1 CCAGGGGGCCGCCTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC > 1:1191351/1‑76 CCAGGGGGCCGCCTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC > 2:700385/1‑76 CCAGGGGGCCGCCTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC > 2:720173/1‑76 CCAGGGGGCCGCCTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC > 2:830418/1‑76 CCAGGGGGCCGCCTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC > 1:161690/1‑76 CAGGGGGCCGCCTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCA > 2:1487234/1‑76 AGGGGGCCNCATTCGCCACNGGTATTCCTCCAGATCTCTACGNATTTCACCGCTACACCTGGAATTCTACCCCCAT < 2:1278969/76‑1 GGGGGCCGCCTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCATA < 1:450826/76‑1 GGGGCCGCCTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAA < 1:768836/76‑1 CGCCTTCGCCACCGGTATTCCTCCAGATCTCAACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCT < 2:252877/76‑1 CCTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAA < 1:1054546/76‑1 CTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAAC < 2:1473793/76‑1 TCGCCACCGATATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTT > 2:1226200/1‑76 GCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAA > 1:1246341/1‑76 CCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAG > 2:172480/1‑76 ACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGG < 1:1416831/76‑1 TATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAA > 2:1058084/1‑76 ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAAC > 2:262497/1‑76 TCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCA > 2:99401/1‑76 TCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCT > 1:302839/1‑76 TCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCT > 1:321632/1‑76 CCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTG > 2:702802/1‑76 CCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTG > 1:520713/1‑76 CCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTG > 1:520707/1‑76 AGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAA > 1:858149/1‑76 tATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG > 2:506258/2‑76 ATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGA > 1:637237/1‑76 TACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCG < 1:824871/76‑1 TACGCATTTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCG < 2:570500/76‑1 TACGCAATTCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCG < 1:507960/76‑1 TCACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCG < 1:847303/76‑1 ACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGT < 2:822295/76‑1 ACCGCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGT > 2:835111/1‑76 GCTACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCC > 2:822303/1‑76 TACACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTC < 1:683392/76‑1 ACCTGGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTT < 1:357371/76‑1 GGAATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGA > 1:484825/1‑76 AATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACG > 1:362634/1‑76 AATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACG > 2:1191070/1‑76 AATTCTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACG > 1:299318/1‑76 CTACCCCCATAAGCGCTAACTTAAGGGTTGAACCATNTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACNATGC > 1:190695/1‑76 TACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCC > 2:1059310/1‑76 cCCCCCATCAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCT > 2:915326/2‑76 ACCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCT > 2:15645/1‑76 GTCCAGGGGGCCGCCTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCccc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2651821‑2651895‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCT < REL606/2774196‑2774124 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |